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Report for CCDS15674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15674.1 Public Mus musculus 2 Gata3 23 108 98 CCDS HistoryNCBI Gene:14462Re-query CCDS DB by CCDS ID:15674.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102976.3 ENSMUSP00000100041.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102976.3Link to Ensembl Protein Viewer:ENSMUSP00000100041.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102976Re-query CCDS DB by Protein ID:ENSMUSP00000100041
Original member NCBI NM_008091.3 NP_032117.1 Updated not alive Link to Nucleotide Sequence:NM_008091.3Link to Protein Sequence:NP_032117.1Re-query CCDS DB by Nucleotide ID:NM_008091Re-query CCDS DB by Protein ID:NP_032117
Current member NCBI NM_008091.4 NP_032117.1 Accepted alive Link to Nucleotide Sequence:NM_008091.4Link to Protein Sequence:NP_032117.1Re-query CCDS DB by Nucleotide ID:NM_008091Re-query CCDS DB by Protein ID:NP_032117Link to BLAST:NP_032117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032117.1 443 P23772 443 100% 0 0

Chromosomal Locations for CCDS 15674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 9858370 9858654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9863095 9863220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9868761 9868906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9874389 9874925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9877352 9877589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGAGGTGACTGCGGACCAGCCGCGCTGGGTGAGCCACCATCACCCCGCGGTCCTCAACGGTCAGCACC
CAGACACGCACCACCCGGGCCTCGGCCATTCGTACATGGAAGCTCAGTATCCGCTGACGGAAGAGGTGGA
CGTACTTTTTAACATCGATGGTCAAGGCAACCACGTCCCGTCCTACTACGGAAACTCCGTCAGGGCTACG
GTGCAGAGGTATCCTCCGACCCACCACGGGAGCCAGGTATGCCGCCCGCCTCTGCTGCACGGATCTCTGC
CCTGGCTGGATGGCGGCAAAGCCCTGAGCAGCCACCACACCGCCTCGCCCTGGAACCTCAGCCCCTTCTC
CAAGACGTCCATCCACCACGGCTCTCCGGGGCCTCTGTCCGTTTACCCTCCGGCTTCATCCTCTTCTCTG
GCGGCCGGCCACTCCAGTCCTCATCTCTTCACCTTCCCGCCCACCCCGCCGAAAGACGTCTCCCCAGACC
CGTCGCTGTCCACCCCGGGATCCGCCGGGTCGGCCAGGCAAGATGAGAAAGAGTGCCTCAAGTATCAGGT
GCAGCTGCCAGATAGCATGAAGCTGGAGACGTCTCACTCTCGAGGCAGCATGACCACCCTGGGTGGGGCC
TCATCCTCAGCCCACCACCCCATTACCACCTATCCGCCCTATGTGCCCGAGTACAGCTCTGGACTCTTCC
CACCCAGCAGCCTGCTGGGAGGATCCCCTACCGGGTTCGGATGTAAGTCGAGGCCCAAGGCACGATCCAG
CACAGAAGGCAGGGAGTGTGTGAACTGCGGGGCAACCTCTACCCCACTGTGGCGGCGAGATGGTACCGGG
CACTACCTTTGCAATGCCTGCGGACTCTACCATAAAATGAATGGGCAGAACCGGCCCCTTATCAAGCCCA
AGCGAAGGCTGTCGGCAGCAAGGAGAGCAGGGACATCCTGCGCGAACTGTCAGACCACCACCACCACCCT
CTGGAGGAGGAACGCTAATGGGGACCCGGTCTGCAATGCCTGTGGGCTGTACTACAAGCTTCATAATATT
AACAGACCCCTGACTATGAAGAAAGAAGGCATCCAGACCCGAAACCGGAAGATGTCTAGCAAATCGAAAA
AGTGCAAAAAGGTGCATGACGCGCTGGAGGACTTCCCCAAGAGCAGCTCCTTCAACCCGGCCGCTCTCTC
CAGACACATGTCATCCCTGAGCCACATCTCTCCCTTCAGCCACTCCAGCCACATGCTGACCACACCGACG
CCCATGCATCCGCCCTCCGGCCTCTCCTTCGGACCTCACCACCCTTCCAGCATGGTCACCGCCATGGGTT
AG

Translation (443 aa):
MEVTADQPRWVSHHHPAVLNGQHPDTHHPGLGHSYMEAQYPLTEEVDVLFNIDGQGNHVPSYYGNSVRAT
VQRYPPTHHGSQVCRPPLLHGSLPWLDGGKALSSHHTASPWNLSPFSKTSIHHGSPGPLSVYPPASSSSL
AAGHSSPHLFTFPPTPPKDVSPDPSLSTPGSAGSARQDEKECLKYQVQLPDSMKLETSHSRGSMTTLGGA
SSSAHHPITTYPPYVPEYSSGLFPPSSLLGGSPTGFGCKSRPKARSSTEGRECVNCGATSTPLWRRDGTG
HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI
NRPLTMKKEGIQTRNRKMSSKSKKCKKVHDALEDFPKSSSFNPAALSRHMSSLSHISPFSHSSHMLTTPT
PMHPPSGLSFGPHHPSSMVTAMG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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