NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21310.1 Public Mus musculus 7 Gas2 23 108 98 CCDS HistoryNCBI Gene:14453Re-query CCDS DB by CCDS ID:21310.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051912.12 ENSMUSP00000053514.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051912.12Link to Ensembl Protein Viewer:ENSMUSP00000053514.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051912Re-query CCDS DB by Protein ID:ENSMUSP00000053514
Original member Current member EBI ENSMUST00000107591.8 ENSMUSP00000103217.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107591.8Link to Ensembl Protein Viewer:ENSMUSP00000103217.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107591Re-query CCDS DB by Protein ID:ENSMUSP00000103217
Original member Current member EBI ENSMUST00000208711.1 ENSMUSP00000146537.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208711.1Link to Ensembl Protein Viewer:ENSMUSP00000146537.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208711Re-query CCDS DB by Protein ID:ENSMUSP00000146537
Original member NCBI NM_001330607.1 NP_001317536.1 Updated not alive Link to Nucleotide Sequence:NM_001330607.1Link to Protein Sequence:NP_001317536.1Re-query CCDS DB by Nucleotide ID:NM_001330607Re-query CCDS DB by Protein ID:NP_001317536
Current member NCBI NM_001330607.2 NP_001317536.1 Accepted alive Link to Nucleotide Sequence:NM_001330607.2Link to Protein Sequence:NP_001317536.1Re-query CCDS DB by Nucleotide ID:NM_001330607Re-query CCDS DB by Protein ID:NP_001317536Link to BLAST:NP_001317536.1
Original member NCBI NM_008087.3 NP_032113.1 Updated not alive Link to Nucleotide Sequence:NM_008087.3Link to Protein Sequence:NP_032113.1Re-query CCDS DB by Nucleotide ID:NM_008087Re-query CCDS DB by Protein ID:NP_032113
Current member NCBI NM_008087.4 NP_032113.1 Accepted alive Link to Nucleotide Sequence:NM_008087.4Link to Protein Sequence:NP_032113.1Re-query CCDS DB by Nucleotide ID:NM_008087Re-query CCDS DB by Protein ID:NP_032113Link to BLAST:NP_032113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317536.1 314 P11862 314 100% 0 0
NP_032113.1 314 P11862 314 100% 0 0

Chromosomal Locations for CCDS 21310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 51887929 51888076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51897251 51897372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51926403 51926544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51936554 51936617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51943650 51943791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51953194 51953301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51993291 51993509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGATGTGCACTGCCCTGAGCCCCAAGGTTCGCAGCGGACCTGGCCTGTCTGATATGCATCAGTACAGCC
AGTGGCTGGCCAGCAGACATGAAGCTAATTTGCTGCCGATGAAAGAAGACTTGGCCTTGTGGTTAACCAA
TCTATTAGGGAAAGAGATAACAGCAGAAACCTTCATGGAGAAGTTGGATAATGGTGCCTTGCTCTGTCAG
CTTGCAGCAACTGTGCAGGAGAAATTCAAAGAGAGTATGGATGCCAACAAGCCTGCCAAGACCCTACCAC
TGAAGAAGATTCCTTGCAAAGCCAGTGCACCCTCGGGCTCCTTTTTTGCCCGAGACAACACAGCCAATTT
CCTATCCTGGTGCCGAGATTTGGGAGTTGATGAAACATGTCTTTTTGAATCTGAAGGCCTGGTTCTGCAT
AAGCAGCCCCGAGAAGTGTGTCTCTGTTTGCTAGAGCTTGGTCGGATTGCAGCCAGGTATGGTGTGGAGC
CTCCTGGTCTGATAAAGCTGGAAAAAGAAATTGAACAAGAAGAGACACTTTCTGCCCCATCTCCTTCGCC
TTCTCCTTCATCAAAGTCTTCAGGAAAGAAGAGTACTGGAAACTTACTGGATGATGCAGTAAAAAGAATC
TCTGAAGATCCTCCCTGCAAGTGCCCAACCAAGTTCTGTGTGGAGCGGCTCTCTCAAGGTCGATACCGAG
TGGGAGAGAAGATCCTCTTCATCAGGATGCTGCACAACAAGCATGTGATGGTCCGAGTGGGAGGAGGCTG
GGAGACCTTCGCTGGCTATCTGCTCAAGCATGACCCCTGCCGCATGCTGCAGATCTCCCGTGTGGACGGC
AAGACATCCCCTGTCCAGAGCAAATCCCCAACCCTGAAGGACATGAATCCTGATAATTACCTGGTGGTCT
CTGCCACCTACAAGGCTAAGAAGGAGATTAAATGA

Translation (314 aa):
MMCTALSPKVRSGPGLSDMHQYSQWLASRHEANLLPMKEDLALWLTNLLGKEITAETFMEKLDNGALLCQ
LAATVQEKFKESMDANKPAKTLPLKKIPCKASAPSGSFFARDNTANFLSWCRDLGVDETCLFESEGLVLH
KQPREVCLCLLELGRIAARYGVEPPGLIKLEKEIEQEETLSAPSPSPSPSSKSSGKKSTGNLLDDAVKRI
SEDPPCKCPTKFCVERLSQGRYRVGEKILFIRMLHNKHVMVRVGGGWETFAGYLLKHDPCRMLQISRVDG
KTSPVQSKSPTLKDMNPDNYLVVSATYKAKKEIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH