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Report for CCDS27441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27441.1 Public Mus musculus 15 Fzd6 23 108 98 CCDS HistoryNCBI Gene:14368Re-query CCDS DB by CCDS ID:27441.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022906.7 ENSMUSP00000022906.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022906.7Link to Ensembl Protein Viewer:ENSMUSP00000022906.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022906Re-query CCDS DB by Protein ID:ENSMUSP00000022906
Original member Current member EBI ENSMUST00000179165.8 ENSMUSP00000136328.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179165.8Link to Ensembl Protein Viewer:ENSMUSP00000136328.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179165Re-query CCDS DB by Protein ID:ENSMUSP00000136328
Original member Current member NCBI NM_001162494.1 NP_001155966.1 Accepted alive Link to Nucleotide Sequence:NM_001162494.1Link to Protein Sequence:NP_001155966.1Re-query CCDS DB by Nucleotide ID:NM_001162494Re-query CCDS DB by Protein ID:NP_001155966Link to BLAST:NP_001155966.1
Original member NCBI NM_008056.3 NP_032082.3 Updated not alive Link to Nucleotide Sequence:NM_008056.3Link to Protein Sequence:NP_032082.3Re-query CCDS DB by Nucleotide ID:NM_008056Re-query CCDS DB by Protein ID:NP_032082
Current member NCBI NM_008056.4 NP_032082.3 Accepted alive Link to Nucleotide Sequence:NM_008056.4Link to Protein Sequence:NP_032082.3Re-query CCDS DB by Nucleotide ID:NM_008056Re-query CCDS DB by Protein ID:NP_032082Link to BLAST:NP_032082.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155966.1 709 Q61089 709 100% 0 0
NP_032082.3 709 Q61089 709 100% 0 0

Chromosomal Locations for CCDS 27441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39007387 39007563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39025666 39025862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39030815 39031832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39033850 39033998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39034808 39035227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39036386 39036554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGAAAGGTCCCCGTTTCTGTTGGCGTGCATTCTTCTGCCCCTCGTAAGAGGACACAGCCTTTTCACCT
GTGAGCCAATCACCGTTCCCAGATGTATGAAAATGACTTACAACATGACGTTCTTCCCTAACCTGATGGG
TCATTATGACCAGGGGATCGCTGCTGTGGAAATGGGGCACTTTCTGCATCTTGCAAATCTAGAATGTTCA
CCAAACATTGAAATGTTCCTTTGCCAAGCTTTTATACCAACCTGCACAGAGCAAATTCATGTAGTTCTAC
CCTGTCGGAAATTGTGTGAGAAAATAGTTTCTGATTGCAAAAAACTAATGGACACTTTTGGCATCCGATG
GCCTGAAGAACTTGAATGTAACAGATTGCCACACTGTGATGACACTGTTCCTGTAACTTCTCATCCACAC
ACAGAGCTTTCTGGGCCACAGAAGAAATCAGATCAAGTCCCAAGAGACATTGGATTTTGGTGTCCAAAGC
ACCTTAGGACTTCCGGGGACCAAGGCTATAGGTTTCTGGGAATTGAACAGTGTGCCCCTCCGTGCCCCAA
TATGTATTTTAAAAGTGATGAACTAGACTTTGCCAAAAGTTTCATAGGAATAGTTTCAATATTTTGTCTT
TGTGCAACTCTGTTCACGTTCCTTACATTTTTAATTGACGTTAGACGATTCAGATACCCAGAGAGACCAA
TTATCTATTACTCTGTCTGCTACAGCATTGTCTCTCTCATGTACTTCGTGGGGTTTTTGCTGGGCAATAG
CACGGCTTGTAATAAGGCAGACGAGAAGCTGGAGCTCGGGGACACCGTTGTCCTAGGGTCAAAGAATAAG
GCTTGCAGTGTGGTATTTATGTTTCTGTATTTTTTTACAATGGCTGGCACCGTGTGGTGGGTGATTCTCA
CCATTACGTGGTTCTTAGCTGCCGGGAGAAAATGGAGTTGCGAAGCTATTGAACAAAAAGCAGTGTGGTT
CCATGCCGTTGCCTGGGGGGCGCCCGGGTTCCTGACCGTCATGCTGCTCGCTATGAATAAGGTTGAAGGA
GACAACATTAGCGGCGTTTGCTTCGTTGGCCTGTATGACCTGGACGCCTCTCGCTACTTCGTCCTTCTGC
CTCTGTGCCTCTGCGTATTTGTTGGGCTGTCTCTCCTCTTAGCCGGCATCATCTCCTTGAATCATGTCCG
ACAAGTCATACAGCATGATGGCCGGAACCAAGAGAAGCTAAAGAAATTCATGATTCGCATCGGAGTCTTC
AGTGGCCTGTATCTTGTGCCCTTAGTGACACTTCTCGGTTGCTATGTCTATGAGCTAGTGAACAGGATCA
CCTGGGAGATGACATGGTTCTCTGATCATTGTCACCAGTACCGCATCCCGTGCCCTTACCAGGCAAATCC
AAAAGCTCGACCAGAATTGGCTTTATTTATGATAAAATATCTGATGACATTAATTGTTGGTATCTCTGCG
GTCTTCTGGGTTGGAAGCAAAAAGACGTGCACAGAATGGGCCGGGTTCTTTAAGCGAAACCGCAAGCGAG
ACCCCATCAGTGAGAGCCGCCGAGTGCTGCAAGAGTCCTGTGAGTTCTTCCTGAAGCACAACTCTAAAGT
GAAGCACAAGAAGAAGCATGGCGCACCAGGGCCTCATAGGCTGAAGGTCATTTCCAAGTCCATGGGAACT
AGCACAGGAGCGACCACAAATCATGGCACCTCTGCCATGGCAATCGCTGACCATGATTACTTAGGGCAAG
AAACTTCAACAGAAGTCCACACCTCCCCAGAAGCATCCGTCAAAGAGGGACGAGCAGACCGAGCAAACAC
TCCCAGCGCCAAAGATCGGGACTGTGGGGAATCTGCAGGGCCCAGTTCCAAGCTCTCTGGGAACCGGAAC
GGCAGGGAAAGCCGAGCGGGCGGCCTGAAGGAGAGAAGCAATGGATCAGAGGGGGCTCCAAGTGAAGGAA
GGGTAAGTCCAAAGAGCAGCGTTCCTGAGACTGGCCTGATAGACTGCAGCACTTCACAGGCCGCCAGTTC
TCCAGAACCAACCAGCCTCAAGGGCTCCACATCTCTGCCTGTTCACTCAGCTTCCAGAGCTAGGAAAGAG
CAGGGTGCTGGCAGCCATTCCGACGCTTGA

Translation (709 aa):
MERSPFLLACILLPLVRGHSLFTCEPITVPRCMKMTYNMTFFPNLMGHYDQGIAAVEMGHFLHLANLECS
PNIEMFLCQAFIPTCTEQIHVVLPCRKLCEKIVSDCKKLMDTFGIRWPEELECNRLPHCDDTVPVTSHPH
TELSGPQKKSDQVPRDIGFWCPKHLRTSGDQGYRFLGIEQCAPPCPNMYFKSDELDFAKSFIGIVSIFCL
CATLFTFLTFLIDVRRFRYPERPIIYYSVCYSIVSLMYFVGFLLGNSTACNKADEKLELGDTVVLGSKNK
ACSVVFMFLYFFTMAGTVWWVILTITWFLAAGRKWSCEAIEQKAVWFHAVAWGAPGFLTVMLLAMNKVEG
DNISGVCFVGLYDLDASRYFVLLPLCLCVFVGLSLLLAGIISLNHVRQVIQHDGRNQEKLKKFMIRIGVF
SGLYLVPLVTLLGCYVYELVNRITWEMTWFSDHCHQYRIPCPYQANPKARPELALFMIKYLMTLIVGISA
VFWVGSKKTCTEWAGFFKRNRKRDPISESRRVLQESCEFFLKHNSKVKHKKKHGAPGPHRLKVISKSMGT
STGATTNHGTSAMAIADHDYLGQETSTEVHTSPEASVKEGRADRANTPSAKDRDCGESAGPSSKLSGNRN
GRESRAGGLKERSNGSEGAPSEGRVSPKSSVPETGLIDCSTSQAASSPEPTSLKGSTSLPVHSASRARKE
QGAGSHSDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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