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Report for CCDS30167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30167.1 Public Mus musculus X Slitrk4 23 108 98 CCDS HistoryNCBI Gene:245446Re-query CCDS DB by CCDS ID:30167.1Re-query CCDS DB by GeneID:245446See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069926.13 ENSMUSP00000064443.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069926.13Link to Ensembl Protein Viewer:ENSMUSP00000064443.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069926Re-query CCDS DB by Protein ID:ENSMUSP00000064443
Original member Current member EBI ENSMUST00000114679.1 ENSMUSP00000110327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114679.1Link to Ensembl Protein Viewer:ENSMUSP00000110327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114679Re-query CCDS DB by Protein ID:ENSMUSP00000110327
Original member Current member NCBI NM_001365111.1 NP_001352040.1 Accepted alive Link to Nucleotide Sequence:NM_001365111.1Link to Protein Sequence:NP_001352040.1Re-query CCDS DB by Nucleotide ID:NM_001365111Re-query CCDS DB by Protein ID:NP_001352040Link to BLAST:NP_001352040.1
Original member Current member NCBI NM_001365112.1 NP_001352041.1 Accepted alive Link to Nucleotide Sequence:NM_001365112.1Link to Protein Sequence:NP_001352041.1Re-query CCDS DB by Nucleotide ID:NM_001365112Re-query CCDS DB by Protein ID:NP_001352041Link to BLAST:NP_001352041.1
Original member Current member NCBI NM_178740.5 NP_848855.2 Accepted alive Link to Nucleotide Sequence:NM_178740.5Link to Protein Sequence:NP_848855.2Re-query CCDS DB by Nucleotide ID:NM_178740Re-query CCDS DB by Protein ID:NP_848855Link to BLAST:NP_848855.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352040.1 837 Q810B8 837 100% 0 0
NP_001352041.1 837 Q810B8 837 100% 0 0
NP_848855.2 837 Q810B8 837 100% 0 0

Chromosomal Locations for CCDS 30167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 64270546 64273059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGTTTCTTTGGCTCTTTCTGATTGTGTCAGCCCTGATTTCTTCTACAAATGCAGATTCTGACATATCAG
TGGAAATTTGCAATGTGTGTTCCTGCGTGTCAGTAGAGAATGTGCTCTATGTCAACTGTGAGAAGGTTTC
AGTCTACAGGCCAAACCAGCTGAAACCACCTTGGTCTAATTTCTATCATCTCAATTTCCAAAACAATTTT
TTAAATATCCTCTATCCAAATACATTCGTGAATTTTTCTCATGCAGTATCTCTGCATCTGGGAAATAATA
AGCTGCAGAACATTGAGGGAGGAGCCTTTCTCGGGCTCAGTGCATTAAAGCAGTTGCACTTGAACAACAA
TGAATTAAAGATTCTCCGAGCTGACACTTTCCTTGGCATAGAGAACTTGGAGTATCTCCAGGCTGACTAC
AATTTAATCAAGTATATTGAACGAGGAGCCTTCAATAAGCTCCATAAACTGAAAGTTCTCATTCTTAATG
ACAATCTGATTTCATTCCTTCCTGATAATATTTTTCGATTTGCATCTTTAACCCATTTGGATATACGAGG
AAACAGAATCCAGAAACTTCCTTATATTGGAGTTCTAGAACACATTGGCCGGGTTGTTGAGTTGCAGCTG
GAAGATAATCCTTGGAACTGTAGCTGTGATTTGTTGCCTCTAAAGGCTTGGCTGGAGAATATGCCATATA
ACATTTACATAGGAGAAGCTATTTGTGAAACTCCCAGTGACTTATATGGAAGGCTTTTAAAGGAAACCAA
CAAGCAAGAACTATGCCCCATGGGTACAGGCAGTGACTTTGACGTACGCATTCTGCCTCCATCTCAGCAG
GAGAATGGCTTTACTACTCCCAATGGTCACACTACTCAGACAACCTTGCACAGATTAGTGACAAAACCAC
CCAAAACAACAAATCCTTCCAAAATCTCTGGAATTGTGGCAGGCAAAGCCCTATCCAACAGAAATCTCAG
TCAGATTGTGTCATATCAAACAAGAGTGCCTCCTCTTACACCTTGTCCAGTACCTTGCTTTTGCAAAACA
CATCCTTCTGATTTGGGATTGAGTGTGAATTGCCAAGAGAAAAATATACAGTCCATGTCTGAATTGACAC
CAAAACCTTTGAATGCCAAGAAGTTGCATGTCAATGGTAATAACATCAAAGATGTGGACATTTCAGACTT
CACTGAGTTTGAGGGGCTGGATTTGCTCCATTTAGGCAGCAATCAGATTACGTTGATCAAAGGAGAAGTA
TTCCACAATCTTACTAATCTGCGCAGGCTTTATCTCAATGGCAATCAGATTGAAAGGCTATACCCTGAAA
TATTTTCAGGACTTCATAACCTGCAGTATCTTTATTTGGAGTACAACTTGATTAAGGAAATTTTAGCAGG
CACCTTTGACTCCATGCCAAATTTGCAGCTACTGTACTTGAACAATAATCTCTTAAAAAGCCTGCCAGTT
TACATCTTTTCTGGAGCACCACTTGCTAGACTGAACCTGAGAAACAACAAATTCATGTACCTACCTGTCA
GCGGAGTACTTGATCAGTTGCAGTCTCTTACACAAATTGACTTAGAGGGCAACCCTTGGGACTGCACCTG
CGACTTGGTAGCATTAAAGTTGTGGCTGGAGAAGTTAAATGATGGGATTGTTGTGAAAGAACTGAAATGT
GAGACTCCTGTTCAGTTTGCCAACATCGAATTGAAGTCCCTCAAAAATGAAATCTTATGCCCTAAACTCT
TAAACAAGCCATCAGCAACATTCACAAGCCCTGCGCCTGCAATTACCTTCACCACTCCATTGGGTCCTAT
TCGAAGTCCTCCTGGGGGCCCAGTGCCATTATCTATTTTAATCTTAAGTATTCTGGTGGTTCTCATTTTA
ACTGTCTTTGTTGCATTTTGCCTTCTTGTTTTTGTGCTGAGACGTAACAAGAAACCCACAGTGAAGCATG
AAGGTCTGGGGAATTCTGAGTGTGGCTCCATGCAGCTGCAACTAAGGAAACATGACCACAAAACCAATAA
AAAAGATGGACTGAGCACAGAAGCATTCATTCCACAAACCATCGAACAGATGAGCAAAAGTCACACCTGT
GGCCTGAAAGAGTCAGAAACTGGGTTCATGTTTTCTGATCCTCCGGGACAGAAGGTAATGATGAGAAATG
CTGCTGACAAGGACAAAGATTTATTGCATGTGGATACCAGGAAAAGACTGAGCACAATTGACGAGCTGGA
CGAACTCTTCCCTAGCAGAGATTCCAATGTGTTCATTCAAAATTTTCTTGAAAGCAAAAAGGAGTATAAC
AGCATTGGTGTCAGTGGCTTTGAGATTCGCTATCCTGAAAAACAACAAGATAAAAAAAACAAGAAGTCAC
TGATAGGTGGTAACCACAGTAAAATTGTTGTTGAACAAAGGAAGAGTGAGTATTTTGAACTGAAGGCAAA
ACTTCAGAGTTCCCCCGACTACCTACAGGTCCTTGAAGAGCAAACAGCTTTGAACAAGATATAG

Translation (837 aa):
MFLWLFLIVSALISSTNADSDISVEICNVCSCVSVENVLYVNCEKVSVYRPNQLKPPWSNFYHLNFQNNF
LNILYPNTFVNFSHAVSLHLGNNKLQNIEGGAFLGLSALKQLHLNNNELKILRADTFLGIENLEYLQADY
NLIKYIERGAFNKLHKLKVLILNDNLISFLPDNIFRFASLTHLDIRGNRIQKLPYIGVLEHIGRVVELQL
EDNPWNCSCDLLPLKAWLENMPYNIYIGEAICETPSDLYGRLLKETNKQELCPMGTGSDFDVRILPPSQQ
ENGFTTPNGHTTQTTLHRLVTKPPKTTNPSKISGIVAGKALSNRNLSQIVSYQTRVPPLTPCPVPCFCKT
HPSDLGLSVNCQEKNIQSMSELTPKPLNAKKLHVNGNNIKDVDISDFTEFEGLDLLHLGSNQITLIKGEV
FHNLTNLRRLYLNGNQIERLYPEIFSGLHNLQYLYLEYNLIKEILAGTFDSMPNLQLLYLNNNLLKSLPV
YIFSGAPLARLNLRNNKFMYLPVSGVLDQLQSLTQIDLEGNPWDCTCDLVALKLWLEKLNDGIVVKELKC
ETPVQFANIELKSLKNEILCPKLLNKPSATFTSPAPAITFTTPLGPIRSPPGGPVPLSILILSILVVLIL
TVFVAFCLLVFVLRRNKKPTVKHEGLGNSECGSMQLQLRKHDHKTNKKDGLSTEAFIPQTIEQMSKSHTC
GLKESETGFMFSDPPGQKVMMRNAADKDKDLLHVDTRKRLSTIDELDELFPSRDSNVFIQNFLESKKEYN
SIGVSGFEIRYPEKQQDKKNKKSLIGGNHSKIVVEQRKSEYFELKAKLQSSPDYLQVLEEQTALNKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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