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Report for CCDS23781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23781.1 Public Mus musculus 10 Frk 23 108 98 CCDS HistoryNCBI Gene:14302Re-query CCDS DB by CCDS ID:23781.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019913.14 ENSMUSP00000019913.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019913.14Link to Ensembl Protein Viewer:ENSMUSP00000019913.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019913Re-query CCDS DB by Protein ID:ENSMUSP00000019913
Original member Current member EBI ENSMUST00000170771.2 ENSMUSP00000130289.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170771.2Link to Ensembl Protein Viewer:ENSMUSP00000130289.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170771Re-query CCDS DB by Protein ID:ENSMUSP00000130289
Original member Current member NCBI NM_001159544.1 NP_001153016.1 Accepted alive Link to Nucleotide Sequence:NM_001159544.1Link to Protein Sequence:NP_001153016.1Re-query CCDS DB by Nucleotide ID:NM_001159544Re-query CCDS DB by Protein ID:NP_001153016Link to BLAST:NP_001153016.1
Original member Current member NCBI NM_001358769.1 NP_001345698.1 Accepted alive Link to Nucleotide Sequence:NM_001358769.1Link to Protein Sequence:NP_001345698.1Re-query CCDS DB by Nucleotide ID:NM_001358769Re-query CCDS DB by Protein ID:NP_001345698Link to BLAST:NP_001345698.1
Original member Current member NCBI NM_010237.3 NP_034367.2 Accepted alive Link to Nucleotide Sequence:NM_010237.3Link to Protein Sequence:NP_034367.2Re-query CCDS DB by Nucleotide ID:NM_010237Re-query CCDS DB by Protein ID:NP_034367Link to BLAST:NP_034367.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153016.1 512 Q922K9 512 100% 0 0
NP_001345698.1 512 Q922K9 512 100% 0 0
NP_034367.2 512 Q922K9 512 100% 0 0

Chromosomal Locations for CCDS 23781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 34484005 34484369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34547293 34547414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34583898 34584061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34586166 34586334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34591812 34591970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34605695 34605876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34607806 34607971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34608360 34608571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGGCAGCGTCTGTGTGAGACTCTGGGCATACCTGCAGCCTTTTCTCCCGTGCTGGTCTCAAGAGGCAG
ACAAGTCAGTAGTAATTGAGAATCCAGGGGCCTTCTGTCCCCCAGAGGCTCCCAGGTCACAAGAGCCCGA
GAGAAGCCATGGCCAGTATTTTGTGGCTCTGTTTGATTACCAAGCACGTACTGCAGAGGACCTGAGCTTC
CGTGCCGGCGACAAACTCCAAGTCTTGGACACTTCGCATGAGGGCTGGTGGTTGGCCAGACATTTGGAGA
AGAAGGGAACCGGCTTAGGTCAGCAGCTACAGGGCTACATTCCTTCCAATTACGTGGCGGAGGACCGGAG
TCTCCAGGCAGAGCCGTGGTTTTTTGGAGCAATCAAAAGAGCAGATGCAGAAAAACAACTTCTGTATTCA
GAAAACCAGACGGGCGCCTTTCTAATCAGAGAGAGTGAGAGCCAGAAGGGTGACTTTTCCCTCTCAGTTT
TAGATGAAGGTGTTGTAAAACACTACAGAATAAGAAGGTTGGATGAAGGTGGCTTCTTCCTCACCAGGAG
GAAAGTCTTTTCAACCCTGAATGAATTCGTGAACTACTACACCACAACAAGTGACGGGCTGTGTGTCAAG
CTGGAGAAGCCATGCTTAAAGATCCAGGTACCAACCCCTTTTGATTTGTCATATAAAACTGCAGACCAGT
GGGAGATAGACCGCAACTCCATACAGCTTTTGAAGCGACTGGGATCTGGTCAGTTTGGAGAAGTTTGGGA
AGGTCTGTGGAATAATACCACTCCAGTGGCCGTAAAAACGTTAAAACCAGGTTCAATGGATCCAAATGAC
TTCCTGAGGGAGGCACAGATAATGAAGAGCCTAAGACACCCAAAACTCATCCAGCTCTATGCTGTTTGCA
CTTTAGAAGATCCCATTTATATTATTACAGAGTTGATGAGACATGGAAGCCTGCAAGAATATCTCCAAAA
TGATGGTGGGTCAAAAATCCATTTGATTCAACAGGTAGACATGGCGGCACAGGTGGCTTCTGGAATGGCC
TATCTTGAGTCGCAGAACTATATTCACAGAGATCTGGCTGCAAGAAATGTCCTTGTTGGTGAACATAATA
TCTACAAAGTAGCAGATTTTGGACTTGCAAGAGTTTTTAAGGTAGATAATGAAGACATCTATGAATCTAA
ACACGAAATAAAGCTGCCAGTGAAGTGGACTGCACCCGAAGCCATTCGTACTAATAAATTCAGCATTAAG
TCTGATGTGTGGTCTTTTGGAATCCTGCTCTATGAAATCATTACTTATGGCAAAATGCCTTACAGTGGTA
TGACAGGTGCTCAAGTAATTCAAATGTTGAGTCAAAACTACAGACTTCCACAGCCATCTAACTGCCCACA
GCAATTCTACAGCATCATGCTAGAGTGCTGGAATGTTGAGCCTAAGCAACGGCCAACATTTGAGACCCTG
CATTGGAAACTTGAAGACTACTTTGAAACAGACTGTTCCTATTCAGATACAAATAACTTCATAAACTAA

Translation (512 aa):
MGSVCVRLWAYLQPFLPCWSQEADKSVVIENPGAFCPPEAPRSQEPERSHGQYFVALFDYQARTAEDLSF
RAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDRSLQAEPWFFGAIKRADAEKQLLYS
ENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVK
LEKPCLKIQVPTPFDLSYKTADQWEIDRNSIQLLKRLGSGQFGEVWEGLWNNTTPVAVKTLKPGSMDPND
FLREAQIMKSLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDGGSKIHLIQQVDMAAQVASGMA
YLESQNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDIYESKHEIKLPVKWTAPEAIRTNKFSIK
SDVWSFGILLYEIITYGKMPYSGMTGAQVIQMLSQNYRLPQPSNCPQQFYSIMLECWNVEPKQRPTFETL
HWKLEDYFETDCSYSDTNNFIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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