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Report for CCDS22624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22624.1 Public Mus musculus 8 Dpep3 23 108 98 CCDS HistoryNCBI Gene:71854Re-query CCDS DB by CCDS ID:22624.1Re-query CCDS DB by GeneID:71854See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034371.8 ENSMUSP00000034371.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034371.8Link to Ensembl Protein Viewer:ENSMUSP00000034371.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034371Re-query CCDS DB by Protein ID:ENSMUSP00000034371
Original member Current member NCBI NM_027960.2 NP_082236.1 Accepted alive Link to Nucleotide Sequence:NM_027960.2Link to Protein Sequence:NP_082236.1Re-query CCDS DB by Nucleotide ID:NM_027960Re-query CCDS DB by Protein ID:NP_082236Link to BLAST:NP_082236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082236.1 493 Q9DA79 493 100% 0 0

Chromosomal Locations for CCDS 22624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105973591 105973851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105974695 105974830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105975182 105975257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105976120 105976204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105977261 105977437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105977560 105977629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105977900 105978041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105978142 105978271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105978712 105978838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105979014 105979291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCAGCCCGCGGGTCTTGAGGGTCCACGCGCGCTCGGCCTGCGGCCTCTGGGGCACCGGCTGTCCCTGC
TGGGGGTGTTACTTCTAGTTCCGTCTCTGTGGGTAACCTGCACCCTGACTACTCCGAGCCCCTCCAGTGC
TCCGACAACACCGGAAGCCTCCAATGCCACGACCGCTCCAGGCATTCCTAATGACACGGCCACGTCAGGT
GTGACCAGTGACCCTCGCCTTCGAGAGCAAGCACTGGCTCTGATGCGAGACTTCCCACTTGTGGATGGCC
ACAACGACCTGCCTCTGCTCTTGAGAGAACTTTTCCAGAACCAGCTGCAGGATGTGAATCTGCGCAATTT
CACCCGTGGCCAGACCAACCTGGATAGGCTCAGGGACGGCCTTGTGGGTGCCCAGTTCTGGTCAGCCTAC
ATCCCGTGCCAAACCCAGGACCGGGATGCCGTACGCCTAGCCCTGGAGCAGATTGATCTCATTCGTCGCA
TGTGCTCTGCTTACCCTGAGCTGGAGCTGGTGACCTCAGCTGATGGTCTGAATAACACTCAGAAGCTGGC
CTGCCTCATTGGTGTAGAGGGTGGTCACTCACTGGACACCAGCCTCGCTGTGTTGCGCAGTTTCTATGAG
CTAGGAGTGCGCTACCTGACTCTTACCTTCACCTGCAGCACACCGTGGGCAGAAAGCGCCACAAAATTCA
GACACCATTTCTACACCAACATTAGTGGGTTGACAAGCTTTGGTGAGAAAGTAGTGGAAGAAATGAACCG
TCTGGGCATGATGATAGACTTGTCCCACGCCTCGGACACCTTAGTGAAGCAGACCCTGGAGGTGTCTCAG
GCTCCTGTGATCTTCTCACACTCGGCGGCTAGATCGGTGTGTGACAATTTGCTGAATATTCCTGATGACA
TATTGCAACTTCTGAAGAAGAACGGTGGCATCGTGATGGTGACACTATCCATGGGGGTGCTACAGTGCAG
TCTGTTTGCTAACGTGTCCACTGTAGCAGATCATTTTGACCACATCAGGACAGTCATTGGATCTGAGTTC
ATTGGGATCGGTGGAAGCTATGACGGGTCTGGAAGGTTCCCTCAGGGACTGGAGGATGTATCTACATACC
CAGTGCTGATAGAGGAGTTGCTGAGTCGCGGTTGGGATGAACGAGAGCTTCAAGGTGTCCTTCGAGGAAA
CCTGCTTCGGGTCTTCAGACAAGTGGAACAGGTGAGAGAGAAAAGCCTTGGGCAGAGCCCTGTGGAGGTC
AAGTTTCCAGAGAGGCAGCAGAGCAACACCTGCCACTCCCACCTGCTGCCTCAGCCTCAGGAGGACCAAC
ACCAGGATACACACCTGAAGGTGACAAAGCTGCCAAACATCCTCCAGAGAGCCTCAAAAGCCCCTCCCCA
CCCCTTGCCAGGCCTCATGGCTACGCTCACCTCCCTAGCCCTCATCCTTTGGCTATGTTGCTCTGGCCAC
AGGGCAGTTTAG

Translation (493 aa):
MQPAGLEGPRALGLRPLGHRLSLLGVLLLVPSLWVTCTLTTPSPSSAPTTPEASNATTAPGIPNDTATSG
VTSDPRLREQALALMRDFPLVDGHNDLPLLLRELFQNQLQDVNLRNFTRGQTNLDRLRDGLVGAQFWSAY
IPCQTQDRDAVRLALEQIDLIRRMCSAYPELELVTSADGLNNTQKLACLIGVEGGHSLDTSLAVLRSFYE
LGVRYLTLTFTCSTPWAESATKFRHHFYTNISGLTSFGEKVVEEMNRLGMMIDLSHASDTLVKQTLEVSQ
APVIFSHSAARSVCDNLLNIPDDILQLLKKNGGIVMVTLSMGVLQCSLFANVSTVADHFDHIRTVIGSEF
IGIGGSYDGSGRFPQGLEDVSTYPVLIEELLSRGWDERELQGVLRGNLLRVFRQVEQVREKSLGQSPVEV
KFPERQQSNTCHSHLLPQPQEDQHQDTHLKVTKLPNILQRASKAPPHPLPGLMATLTSLALILWLCCSGH
RAV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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