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Report for CCDS36691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36691.1 Public Mus musculus 13 Ctsll3 23 108 98 CCDS HistoryNCBI Gene:70202Re-query CCDS DB by CCDS ID:36691.1Re-query CCDS DB by GeneID:70202See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36691.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043754.7 ENSMUSP00000036801.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043754.7Link to Ensembl Protein Viewer:ENSMUSP00000036801.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043754Re-query CCDS DB by Protein ID:ENSMUSP00000036801
Original member Current member NCBI NM_027344.3 NP_081620.2 Accepted alive Link to Nucleotide Sequence:NM_027344.3Link to Protein Sequence:NP_081620.2Re-query CCDS DB by Nucleotide ID:NM_027344Re-query CCDS DB by Protein ID:NP_081620Link to BLAST:NP_081620.2

Chromosomal Locations for CCDS 36691.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 60798500 60798599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60798908 60799016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60799584 60799746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60800238 60800462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60800645 60800794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60800891 60801013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60801290 60801415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGACTCCAGTTTTCCTCCTGGCCACCCTGTGCTTAGGGGTGGTCTCAGCTGCTCCAGCACACAATCCCA
GTTTGGATGCTGTATGGGAGGAATGGAAGACAAAACACAAGAAAACATACAACATGAATGATGAAGGACA
GAAGAGAGCAGTGTGGGAGAACAACAAGAAGATGATCGACCTGCACAATGAGGACTATCTGAAGGGGAAG
CACGGCTTCAGCTTGGAGATGAACGCCTTTGGTGATTTGACCAATACAGAATTCAGGGAATTGATGACTG
GCTTTCAAGGCCAAAAGACCAAGATGATGATGAAGGTCTTCCAGGAGCCCTTGCTGGGTGATGTCCCCAA
GTCTGTGGATTGGAGAGATCATGGCTATGTAACTCCTGTGAAAGACCAGGGTTCTTGTGGCTCTTGTTGG
GCTTTTAGTGCAGTTGGTTCACTAGAGGGACAGATGTTCCGGAAAACAGGTAAACTGGTCCCTCTGAGTG
TACAGAACCTAGTGGACTGCTCCTGGTCACAAGGCAACCAAGGCTGCGATGGTGGCTTGCCAGATCTTGC
CTTCCAGTACGTAAAGGATAATGGAGGCTTGGACACCAGTGTGTCCTACCCATATGAAGCACTGAATGGA
ACATGCAGGTACAATCCTAAAAACTCTGCTGCTACAGTCACGGGCTTTGTGAACGTCCAATCCAGTGAAG
ATGCCCTGATGAAGGCTGTGGCCACTGTGGGGCCCATCTCAGTTGGAATTGACACTAAACACAAGTCGTT
CCAGTTCTACAAGGAGGGCATGTACTATGAGCCAGACTGTAGCAGCACTGTTCTGGATCACGCCGTCCTG
GTGGTTGGCTATGGTGAAGAATCAGATGGCAGGAAGTACTGGCTGGTCAAGAACAGCTGGGGTCGAGACT
GGGGCATGAATGGCTACATAAAGATGGCCAAAGACCGGAACAACAACTGTGGGATTGCTTCAGATGCTTC
CTACCCTGTCGTGTGA

Translation (331 aa):
MTPVFLLATLCLGVVSAAPAHNPSLDAVWEEWKTKHKKTYNMNDEGQKRAVWENNKKMIDLHNEDYLKGK
HGFSLEMNAFGDLTNTEFRELMTGFQGQKTKMMMKVFQEPLLGDVPKSVDWRDHGYVTPVKDQGSCGSCW
AFSAVGSLEGQMFRKTGKLVPLSVQNLVDCSWSQGNQGCDGGLPDLAFQYVKDNGGLDTSVSYPYEALNG
TCRYNPKNSAATVTGFVNVQSSEDALMKAVATVGPISVGIDTKHKSFQFYKEGMYYEPDCSSTVLDHAVL
VVGYGEESDGRKYWLVKNSWGRDWGMNGYIKMAKDRNNNCGIASDASYPVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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