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Report for CCDS24539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24539.1 Public Mus musculus 11 Foxi1 23 108 98 CCDS HistoryNCBI Gene:14233Re-query CCDS DB by CCDS ID:24539.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060271.2 ENSMUSP00000058651.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060271.2Link to Ensembl Protein Viewer:ENSMUSP00000058651.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060271Re-query CCDS DB by Protein ID:ENSMUSP00000058651
Original member Current member NCBI NM_023907.4 NP_076396.3 Accepted alive Link to Nucleotide Sequence:NM_023907.4Link to Protein Sequence:NP_076396.3Re-query CCDS DB by Nucleotide ID:NM_023907Re-query CCDS DB by Protein ID:NP_076396Link to BLAST:NP_076396.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076396.3 372 Q922I5 372 100% 0 0

Chromosomal Locations for CCDS 24539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34205510 34206072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34207468 34208023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAGCTCCTTCGACCTCCCAGCGCCTTCACCACCTCGGTGCAGTCCCCAGTTCCCCAGCATCGGCCAGG
AGCCCCCGGAGATGAATCTTTACTATGAGAATTTCTTCCACCCTCAGGGCATGCCCAGTCCTCAGCGCCC
AACCTCCTTCGAAGGTGGTGGCGAATACGGGACCACTCCCAACCCCTACCTCTGGCTCAATGGGCCGGCC
ATGACCCCACCACCCTACCTGCCTGGCACTAACGCCAGCCCCTTTCTACCCCAGGCCTATGGCATGCAGA
GGCAGCTACTGCCCAGCGACCTGGGCTGGCTGCCCATCCCCTCTCAGGAAGAGCTCATGAAGCTGGTACG
CCCACCATATTCCTATTCAGCCCTCATTGCCATGGCAATCCACGGTGCGCCCGACCAGCGCCTCACACTG
AGCCAGATCTACCAGTACGTGGCCGACAACTTTCCCTTTTACAACAAGAGCAAGGCTGGCTGGCAGAACT
CCATCCGCCACAACCTGTCACTCAACGACTGCTTCAAGAAGGTGCCCCGAGATGAGGACGACCCAGGCAA
AGGGAATTACTGGACTCTGGACCCTAACTGTGAGAAGATGTTTGACAACGGAAACTTTCGCAGGAAGAGA
AAGAGAAAATCAGATTCATCCTCCAGCACCAGCTCATTGGCTTCAGAGAAAACGGAGAACGGTCTCCTGG
CCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGGTCTTAGACACCGCCTCGCCAGACACTACCACCAGCTC
CCCAGAGAAGCGGTCCTCCCCTGCCCCCTCGGGCACCCCGTGTCTCAACAACTTCCTCTCCACCATGACA
GCATATGTGAGTGGGACAAACCCTATTAGCCGCTCCGTGGCCACACCAGGACTGAGCTCAGAGCCTATTG
ACAAGATGGGGCAGAACTCACTGAATTTCAACTCCTACACCCCCCTTACCAACCTCAGTAGCCATGGGAA
TGGGGGTGAATGGGCCAACCCAGTAGCCACCAATGCTCTGGGCTATGGAGGCTCCGTCTTCAACCAGTTC
AGTCCACATTTCTACAACAGCATTAACACTAACGGTATCCTATTCCCCAGGGAAGGCACTGAAGTCTAG

Translation (372 aa):
MSSFDLPAPSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGMPSPQRPTSFEGGGEYGTTPNPYLWLNGPA
MTPPPYLPGTNASPFLPQAYGMQRQLLPSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAPDQRLTL
SQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKR
KRKSDSSSSTSSLASEKTENGLLASSPKPTEPQEVLDTASPDTTTSSPEKRSSPAPSGTPCLNNFLSTMT
AYVSGTNPISRSVATPGLSSEPIDKMGQNSLNFNSYTPLTNLSSHGNGGEWANPVATNALGYGGSVFNQF
SPHFYNSINTNGILFPREGTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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