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Report for CCDS76561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76561.1 Public Homo sapiens 12 BIN2 24 110 108 CCDS HistoryNCBI Gene:51411Re-query CCDS DB by CCDS ID:76561.1Re-query CCDS DB by GeneID:51411See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76561.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544402.5 ENSP00000445874.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544402.5Link to Ensembl Protein Viewer:ENSP00000445874.1Re-query CCDS DB by Nucleotide ID:ENST00000544402Re-query CCDS DB by Protein ID:ENSP00000445874
Original member Current member NCBI NM_001290007.2 NP_001276936.1 Accepted alive Link to Nucleotide Sequence:NM_001290007.2Link to Protein Sequence:NP_001276936.1Re-query CCDS DB by Nucleotide ID:NM_001290007Re-query CCDS DB by Protein ID:NP_001276936Link to BLAST:NP_001276936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276936.1 539 Q9UBW5-3 539 100% 0 0

Chromosomal Locations for CCDS 76561.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51281499 51281528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51284716 51284787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51288108 51288188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51291591 51292344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51295796 51295878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51297089 51297164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51299203 51299288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51299607 51299714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51302020 51302115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51302686 51302780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51303087 51303141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51313823 51313903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51324513 51324515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGTGCTGCAGAAATTGGGGAAAGCTGTAGAAACCAAAGATGAACGATTTGAACAAAGCGCTAGCAACT
TCTACCAACAACAGGCAGAAGGCCACAAGCTGTACAAGGACCTGAAGAACTTCCTTAGTGCAGTCAAAGT
GATGCATGAAAGTTCAAAAAGAGTGTCAGAAACCCTGCAGGAGATCTACAGCAGCGAGTGGGACGGTCAT
GAGGAGCTGAAGGCCATCGTATGGAATAATGATCTCCTTTGGGAAGACTACGAGGAGAAACTGGCTGACC
AGGCTGTAAGGACCATGGAAATCTATGTTGCCCAGTTCAGTGAAATTAAGGAGAGAATTGCCAAGCGGGG
TCGGAAACTCGTGGACTATGACAGTGCCCGACACCACCTGGAGGCAGTGCAGAATGCCAAGAAGAAAGAT
GAGGCCAAGACTGCCAAGGCAGAGGAAGAGTTCAACAAAGCCCAGACTGTGTTTGAAGATCTGAACCAAG
AACTACTAGAGGAGCTGCCTATTCTTTATAATAGTCGTATTGGCTGCTATGTGACCATCTTCCAAAACAT
TTCCAACTTGAGGGATGTCTTCTACAGGGAAATGAGCAAGCTGAACCACAATCTCTACGAGGTGATGAGC
AAACTGGAGAAGCAACATTCCAATAAAGTCTTTGTGGTGAAGGGACTGTCAAGCAGCAGCAGGCGCTCTT
TAGTCATTTCTCCCCCAGTTCGAACAGCTACAGTCTCCAGTCCTCTTACCTCACCTACTAGTCCCTCTAC
ACTTTCCTTGAAGAGTGAGAGTGAATCTGTCTCAGCAACTGAAGATCTGGCACCTGATGCAGCCCAAGGG
GAAGACAATTCTGAGATCAAGGAGCTCTTAGAAGAGGAGGAAATAGAGAAGGAAGGATCTGAAGCAAGCT
CCTCTGAGGAAGATGAGCCTCTACCAGCCTGCAATGGCCCCGCCCAGGCCCAGCCCTCTCCTACCACTGA
AAGGGCCAAGTCCCAGGAGGAAGTTCTCCCCAGCTCCACAACTCCATCACCAGGCGGAGCCCTGAGCCCT
TCAGGGCAGCCTTCATCATCTGCCACAGAAGTAGTCCTCCGAACCCGCACCGCAAGTGAAGGATCTGAAC
AACCAAAGAAGAGAGCCTCTATCCAGAGGACCTCAGCACCCCCTAGTAGGCCTCCTCCACCCAGAGCCAC
TGCAAGCCCCAGGCCCTCCTCAGGGAACATACCTTCCAGCCCTACAGCCTCTGGAGGGGGTTCACCCACC
AGCCCTAGGGCCTCCTTGGGGACTGGGACTGCAAGTCCTAGGACCTCCCTAGAGGTCTCTCCTAATCCAG
AACCACCAGAGAAGCCAGTAAGAACTCCTGAGGCCAAAGAAAATGAAAACATCCACAATCAGAACCCTGA
AGAACTTTGTACTTCCCCCACCTTAATGACATCTCAGGTTGCTTCAGAGCCTGGAGAGGCAAAGAAGATG
GAAGACAAGGAAAAGGATAATAAGCTTATCTCAGCTAACTCCTCGGAGGGCCAAGACCAGCTTCAAGTCT
CCATGGTACCAGAAAACAACAACCTCACAGCACCTGAACCTCAAGAAGAGGTATCCACAAGTGAAAATCC
ACAACTCTGA

Translation (539 aa):
MVLQKLGKAVETKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGH
EELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKD
EAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS
KLEKQHSNKVFVVKGLSSSSRRSLVISPPVRTATVSSPLTSPTSPSTLSLKSESESVSATEDLAPDAAQG
EDNSEIKELLEEEEIEKEGSEASSSEEDEPLPACNGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSP
SGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRPPPPRATASPRPSSGNIPSSPTASGGGSPT
SPRASLGTGTASPRTSLEVSPNPEPPEKPVRTPEAKENENIHNQNPEELCTSPTLMTSQVASEPGEAKKM
EDKEKDNKLISANSSEGQDQLQVSMVPENNNLTAPEPQEEVSTSENPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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