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Report for CCDS21219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21219.1 Public Mus musculus 7 Ptov1 23 108 98 CCDS HistoryNCBI Gene:84113Re-query CCDS DB by CCDS ID:21219.1Re-query CCDS DB by GeneID:84113See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046575.16 ENSMUSP00000035281.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046575.16Link to Ensembl Protein Viewer:ENSMUSP00000035281.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046575Re-query CCDS DB by Protein ID:ENSMUSP00000035281
Original member Current member NCBI NM_133949.2 NP_598710.1 Accepted alive Link to Nucleotide Sequence:NM_133949.2Link to Protein Sequence:NP_598710.1Re-query CCDS DB by Nucleotide ID:NM_133949Re-query CCDS DB by Protein ID:NP_598710Link to BLAST:NP_598710.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598710.1 416 Q91VU8 416 100% 0 0

Chromosomal Locations for CCDS 21219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44863433 44863444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44863535 44863732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44864383 44864487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44864612 44864669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44864762 44864835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44864913 44865002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44865472 44865627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44866810 44866917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44867060 44867117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44867193 44867275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44867375 44867512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44869351 44869521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGTCCGCCCGCGCCGTGCCCCGCACCGCTCCGGCGCCGGGGGCCCCCTCGGAGGTCGTGGCCGGCCAC
CGCGGCCCCTGGTCGTCCGCGCCGTGCGCTCACGTTCCTGGCCTGGCGGTCCTCGAGGCCCGCAGCCACC
GCGGATCCGGGCTCGTTCGGCCCCTCCCATGGAGGGTGCTCGAGTCTTTGGAGCCCTGGGGCCTATCGGG
CCCTCTTCACCTGGGCTGACTCTTGGGGGCCTCGCAGTGAACGAGCACCGGCTCAGCAACAAACTGCTGG
CCTGGAGTGGCGTGCTGGAGTGGCAGGAGAAGCGTAGACCCTTCTCGGACTCCACAGCCAAGCTGAAACG
CACCCTGCCCTGCCAGGCCTATGTGAACCAGGGCGAGAACCTGGAGACGGACCAGTGGCCCCAGAAGTTG
ATCATGCAGCTCATCCCACAGCAGCTGCTGACCACACTGGGTCCCCTGTTCCGAAACTCTCAGCTGGCCC
AGTTCCACTTCACCAACAGAGACTGTGACTCCCTCAAGGGCCTCTGCCGCATCATGGGCAATGGCTTCGC
AGGCTGCATGCTCTTCCCCCACATTTCTCCTTGCGAGGTGCGCGTGCTCATGCTCCTGTACTCGTCTAAG
AAGAAGATCTTCATGGGCCTCATCCCCTACGACCAGAGCGGCTTCGTCAACGCCATACGACAGGTCATCA
CCACCCGCAAACAGGCCGTGGGCCCCGGGGGTGTACACTCTGGACCTGTTCAGATTGTCAACAACAAATT
CTTGGCATGGAGTGGTGTCATGGAGTGGCAGGAGCCCAGGCCTGAGCCCAACAGCCGGTCCAAGAGGTGG
CTGCCATCCCACGTCTATGTGAACCAAGGGGAGATCCTGAGAACAGACCAGTGGCCTCGGAGGCTCTTCA
TGCAGCTCATTCCGCAGCAGTTGCTGACCACCCTCGTGCCACTGTTCCGGAATTCACGCCTGGTACAGTT
CCACTTCACTAAGGACATGGAGACTCTGAAGAGCCTTTGCCGGATCATGGACAATGGCTTCGCGGGCTGC
GTGCACTTCTCCTACAAGGCATCGTGTGAGGTGCGTGTGCTCATGCTCCTGTACTCCTCGGAGAAGAAGA
TCTTCATCGGCCTCATCCCGCACGACCAGAGCAACTTTGTCAACGGCATCCGTCGCGTCATCGCCAACCA
GCAGCAGGTCCTGCAGCGAAGCCTGGAGCAGGAGCAGCAGCAGCGAGGGATGGGTGGCTAG

Translation (416 aa):
MVRPRRAPHRSGAGGPLGGRGRPPRPLVVRAVRSRSWPGGPRGPQPPRIRARSAPPMEGARVFGALGPIG
PSSPGLTLGGLAVNEHRLSNKLLAWSGVLEWQEKRRPFSDSTAKLKRTLPCQAYVNQGENLETDQWPQKL
IMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRIMGNGFAGCMLFPHISPCEVRVLMLLYSSK
KKIFMGLIPYDQSGFVNAIRQVITTRKQAVGPGGVHSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRW
LPSHVYVNQGEILRTDQWPRRLFMQLIPQQLLTTLVPLFRNSRLVQFHFTKDMETLKSLCRIMDNGFAGC
VHFSYKASCEVRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQVLQRSLEQEQQQRGMGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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