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Report for CCDS14846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14846.1 Public Mus musculus 1 Tram2 23 108 98 CCDS HistoryNCBI Gene:170829Re-query CCDS DB by CCDS ID:14846.1Re-query CCDS DB by GeneID:170829See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037998.5 ENSMUSP00000047992.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037998.5Link to Ensembl Protein Viewer:ENSMUSP00000047992.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037998Re-query CCDS DB by Protein ID:ENSMUSP00000047992
Original member Current member NCBI NM_177409.3 NP_803128.1 Accepted alive Link to Nucleotide Sequence:NM_177409.3Link to Protein Sequence:NP_803128.1Re-query CCDS DB by Nucleotide ID:NM_177409Re-query CCDS DB by Protein ID:NP_803128Link to BLAST:NP_803128.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803128.1 370 Q924Z5 370 100% 0 0

Chromosomal Locations for CCDS 14846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21001562 21001635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21002970 21003133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21003838 21003981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21004226 21004330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21005567 21005637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21006150 21006234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21006853 21006911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21012793 21012909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21013402 21013511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21037397 21037460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21078994 21079113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGCTTTCCGTAGGAGGACGAAAAGTTACCCGCTCTTCAGCCAGGAGTTCATCATCCACAACCATGCAG
ACATCGGTTTCTGCTTGGTGCTCTGCGTCCTCATCGGGCTTATGTTCGAGGTCACAGCCAAGACTGCCTT
CCTATTTATTTTACCTCAGTATAACATTAGTGTGCCTACAGCAGACAGTGAGACAGTGCACTACCACTAT
GGCCCAAAGGACCTGGTCACCATCTTGTTCTACGTCGTCATCACCATCATCTTCCATGCTGTGGTCCAGG
AGTACATCTTAGACAAAATCAGCAAACGCCTTCATCTCTCCAAGGTCAAACACAGCAAGTTCAATGAATC
TGGACAGCTGCTTGTCTTTCATCTCAGCGCGGTGGCGTGGTGCTTCTATGTGATCGTAACAGAAGGATAT
TTAACAAACCCAAGAAGCCTCTGGGAAGATTACCCGCATGTGTACCTCTCCTTCCAGGTGAAGTTTTTCT
ACTTGGGACAGCTGGCATACTGGTTGCACTCACTACCTGAACTCTACTTCCAGAAGGTGCGGAAGGAAGA
AGTCCCACGCCAGCTGCAATACATTTGTCTGTACCTTCTTCACATCACTGGGGCATACCTCTTAAACCTG
AGCCGCCTGGGGCTGATCTTGCTACTACTGCAGTACTCCACCGAGGCCCTCTTTCACATGGCTCGGCTCT
TCCACTTTGCAGACGAGAATAACGAGAGGCTGTTTAACGCCTGGGCTGCTGTGTTTGGGGTCACGCGTCT
CTTCATCCTCACCCTCGCTGTGCTGACCATTGGCTTTGGATTGGCTCGGGTGGAAAACCAAGTGTTTGAC
CCCGAGAAAGGGAACTTTAACACCTTGCCTTGTAGGCTTGGCATGCTGCTGCTGGTGTGTGTCGCCCAGG
CCTGGCTCATGTGGCGCTTCATCCACTCCCAGTTGCGGCACTGGCGGGAGTATTGGAAGGAGCAGAGTGC
CAAGCGTAGAGTCTCTGCTGTCCCCAGGCCCCCAGCCAAGCTCCTCAAGAGAGAACCTGGTTACCATGAA
AACGGAGTGGTGAAGGCAGAGAACGGGACCTCCTCACGGACTAAGAAACTCAAGTCTCCCTAG

Translation (370 aa):
MAFRRRTKSYPLFSQEFIIHNHADIGFCLVLCVLIGLMFEVTAKTAFLFILPQYNISVPTADSETVHYHY
GPKDLVTILFYVVITIIFHAVVQEYILDKISKRLHLSKVKHSKFNESGQLLVFHLSAVAWCFYVIVTEGY
LTNPRSLWEDYPHVYLSFQVKFFYLGQLAYWLHSLPELYFQKVRKEEVPRQLQYICLYLLHITGAYLLNL
SRLGLILLLLQYSTEALFHMARLFHFADENNERLFNAWAAVFGVTRLFILTLAVLTIGFGLARVENQVFD
PEKGNFNTLPCRLGMLLLVCVAQAWLMWRFIHSQLRHWREYWKEQSAKRRVSAVPRPPAKLLKREPGYHE
NGVVKAENGTSSRTKKLKSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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