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Report for CCDS23119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23119.1 Public Mus musculus 9 Ift46 23 108 98 CCDS HistoryNCBI Gene:76568Re-query CCDS DB by CCDS ID:23119.1Re-query CCDS DB by GeneID:76568See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002099.10 ENSMUSP00000002099.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002099.10Link to Ensembl Protein Viewer:ENSMUSP00000002099.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002099Re-query CCDS DB by Protein ID:ENSMUSP00000002099
Original member Current member EBI ENSMUST00000118186.1 ENSMUSP00000113845.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118186.1Link to Ensembl Protein Viewer:ENSMUSP00000113845.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118186Re-query CCDS DB by Protein ID:ENSMUSP00000113845
Original member Current member EBI ENSMUST00000239014.1 ENSMUSP00000159011.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239014.1Link to Ensembl Protein Viewer:ENSMUSP00000159011.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239014Re-query CCDS DB by Protein ID:ENSMUSP00000159011
Original member Current member NCBI NM_023831.3 NP_076320.2 Accepted alive Link to Nucleotide Sequence:NM_023831.3Link to Protein Sequence:NP_076320.2Re-query CCDS DB by Nucleotide ID:NM_023831Re-query CCDS DB by Protein ID:NP_076320Link to BLAST:NP_076320.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076320.2 301 Q9DB07 301 100% 0 0

Chromosomal Locations for CCDS 23119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44778597 44778638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44782100 44782233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44783731 44783805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44783960 44784053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44784332 44784460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44786294 44786415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44786838 44786904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44789567 44789627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44789891 44789976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44790485 44790580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGCTGATAACAGCAGTGACGAGTACGAGGAGGACAATAAGGAGAAGAAGAAGCCCTCCCAGCTGACAC
CGCAGCAGGGCTTCAGTGAGAACGATGATGATGACGACGATGACTCCTCTGAGACGGATTCCGATGACGA
CGATGACGATGAGGAGCATGGAGCACCTCTGGAAGGGGCGTATGATCCTGCCGACTACGAGCATCTGCCA
GTCTCGGCCGAGATCAAGGAGCTCTTTGAGTACATCAGCCGGTACACACCTCAGTTGATCGATCTGGACC
ACAAACTGAAACCTTTCATTCCTGATTTTATCCCAGCTGTTGGGGATATCGATGCATTTTTAAAGGTGCC
ACGTCCCGATGGAAAGCCTGACCACCTTGGCCTCTTGGTGTTAGATGAACCATCGACAAAGCAGTCGGAC
CCTACCGTGCTTTCGCTGTGGTTAACAGAGAATTCCAAGCAGCATAATATTACGCAACATATGAAAGTAA
AGAGCCTGGAGGATGCAGAGAAGAATCCCAAAGCCATTGACACCTGGATTGAGAGCATCTCTGAGTTACA
CCGTTCCAAGCCCCCTGCAACTGTGCACTACACCAGGCCCATGCCCGACATTGACACTCTGATGCAGGAG
TGGTCCCCGGAATTTGAAGAGCTCCTGGGAAAGGTGAGTCTGCCCACTGTCGAGATCGATTGCAGCCTGG
CTGAGTACATTGACATGATCTGTGCGATCCTGGACATTCCTTTCTATAAGAGCCGGATTCAGTCTCTCCA
CCTGCTCTTTTCCCTCTACTCAGAGTTCAAGAACTCCCAGCATTTTAAAGCTCTTGCTGAAGGCAAAAAA
GTATTCACCCCTCCACCCAACTCTGCCTCCCAGGCTGGGGATGCGGAGACACTGACTTTCATCTGA

Translation (301 aa):
MADNSSDEYEEDNKEKKKPSQLTPQQGFSENDDDDDDDSSETDSDDDDDDEEHGAPLEGAYDPADYEHLP
VSAEIKELFEYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDHLGLLVLDEPSTKQSD
PTVLSLWLTENSKQHNITQHMKVKSLEDAEKNPKAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQE
WSPEFEELLGKVSLPTVEIDCSLAEYIDMICAILDIPFYKSRIQSLHLLFSLYSEFKNSQHFKALAEGKK
VFTPPPNSASQAGDAETLTFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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