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Report for CCDS27465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27465.1 Public Mus musculus 15 Med30 23 108 98 CCDS HistoryNCBI Gene:69790Re-query CCDS DB by CCDS ID:27465.1Re-query CCDS DB by GeneID:69790See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037115.8 ENSMUSP00000042204.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037115.8Link to Ensembl Protein Viewer:ENSMUSP00000042204.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037115Re-query CCDS DB by Protein ID:ENSMUSP00000042204
Original member Current member NCBI NM_027212.2 NP_081488.1 Accepted alive Link to Nucleotide Sequence:NM_027212.2Link to Protein Sequence:NP_081488.1Re-query CCDS DB by Nucleotide ID:NM_027212Re-query CCDS DB by Protein ID:NP_081488Link to BLAST:NP_081488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081488.1 178 Q9CQI9 178 100% 0 0

Chromosomal Locations for CCDS 27465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 52712510 52712686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52719346 52719504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52721024 52721128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52730067 52730162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGTCCACCCCTCCGCTGGCGCCCACGGGCATGGCGTCCGGGCCCTTCGGCGGCCCGCAGGCTCAGCAGG
CCGCGCGCGAGGTCAACACGGCCACGCTGTGCCGCATCGGGCAGGAGACCGTGCAGGACATCGTGTACCG
CACCATGGAGATCTTCCAGCTGCTCAGGAACATGCAGCTGCCAAATGGTGTCACTTACCATACTGGAACT
TACCAAGACCGGCTAACAAAGCTGCAGGACCACCTTCGGCAACTTTCTATTCTCTTCAGGAAGCTGCGAC
TGGTCTATGACAAATGTAATGAGAACTGTGGTGGGATGGACCCCATTCCTGTTGAGCAACTGATTCCATA
TGTGGATGAAGATGGCTCAAAGAACGACGACCGGGCTGGTCCACCTCGTTTTGCTAGCGAAGAGAGACGA
GAAATTGTAGAAGTAAATAAGAAACTCAAACAGAAGAATCAACAGCTGAAGCAGATTATGGATCAATTAC
GGAATCTCATCTGGGACATAAATGCCATGCTGGCAATGAGGAACTAA

Translation (178 aa):
MSTPPLAPTGMASGPFGGPQAQQAAREVNTATLCRIGQETVQDIVYRTMEIFQLLRNMQLPNGVTYHTGT
YQDRLTKLQDHLRQLSILFRKLRLVYDKCNENCGGMDPIPVEQLIPYVDEDGSKNDDRAGPPRFASEERR
EIVEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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