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Report for CCDS24980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24980.1 Public Mus musculus 11 Txndc17 23 108 98 CCDS HistoryNCBI Gene:52700Re-query CCDS DB by CCDS ID:24980.1Re-query CCDS DB by GeneID:52700See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021158.3 ENSMUSP00000021158.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021158.3Link to Ensembl Protein Viewer:ENSMUSP00000021158.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021158Re-query CCDS DB by Protein ID:ENSMUSP00000021158
Original member Current member NCBI NM_026559.3 NP_080835.1 Accepted alive Link to Nucleotide Sequence:NM_026559.3Link to Protein Sequence:NP_080835.1Re-query CCDS DB by Nucleotide ID:NM_026559Re-query CCDS DB by Protein ID:NP_080835Link to BLAST:NP_080835.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080835.1 123 Q9CQM5 123 100% 0 0

Chromosomal Locations for CCDS 24980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72207624 72207768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72208253 72208334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72208730 72208805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72209415 72209483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCCACCTTCGAGGAGGTGAGCGTGCTGGGCTTCGAGGAGTTCGACAAGGCAGTGAAGGAGCATGAGG
GCAAGACCATTTTCGCCTACTTCAGCGGTTCTAAGGATACCGAAGGGAAGAGCTGGTGTCCGGACTGCGT
GGAAGCTGAGCCAGTCATTCGAGAGGGGCTGAAGCATGTTACCGAAGACTGTGTGTTCATCTACTGCCAA
GTAGGAGACAAACCTTACTGGAAAGACCCAAATAATGACTTCAGACAAAAACTGAAAATAACCGCAGTGC
CTACACTACTTAAATATGGAACACCTCAAAAACTTGTGGAGTCTGAGTGCTGTCAATCCAGCCTTGTGGA
GATGATCTTCTCTGAAGATTAA

Translation (123 aa):
MATFEEVSVLGFEEFDKAVKEHEGKTIFAYFSGSKDTEGKSWCPDCVEAEPVIREGLKHVTEDCVFIYCQ
VGDKPYWKDPNNDFRQKLKITAVPTLLKYGTPQKLVESECCQSSLVEMIFSED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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