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Report for CCDS29001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29001.1 Public Mus musculus 17 Abcg5 23 108 98 CCDS HistoryNCBI Gene:27409Re-query CCDS DB by CCDS ID:29001.1Re-query CCDS DB by GeneID:27409See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066175.9 ENSMUSP00000069495.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066175.9Link to Ensembl Protein Viewer:ENSMUSP00000069495.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066175Re-query CCDS DB by Protein ID:ENSMUSP00000069495
Original member Current member NCBI NM_031884.2 NP_114090.1 Accepted alive Link to Nucleotide Sequence:NM_031884.2Link to Protein Sequence:NP_114090.1Re-query CCDS DB by Nucleotide ID:NM_031884Re-query CCDS DB by Protein ID:NP_114090Link to BLAST:NP_114090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114090.1 652 Q99PE8 652 100% 0 0

Chromosomal Locations for CCDS 29001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 84658488 84658681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84660122 84660234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84664692 84664877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84668942 84669080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84669917 84670122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84670222 84670435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84671122 84671251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84672154 84672293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84673523 84673655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84676021 84676119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84676205 84676341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84682011 84682132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 84682728 84682873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGGGTGAGCTGCCCTTTCTGAGTCCAGAGGGAGCCAGAGGGCCTCACATCAACAGAGGGTCTCTGAGCT
CCCTGGAGCAAGGTTCGGTCACGGGCACAGAGGCTCGGCACAGCTTAGGTGTCCTGCATGTGTCCTACAG
CGTCAGCAACCGTGTCGGGCCTTGGTGGAACATCAAATCATGCCAGCAGAAGTGGGACAGGCAAATCCTC
AAAGATGTCTCCTTGTACATCGAGAGTGGCCAGATTATGTGCATCTTAGGCAGCTCAGGCTCAGGGAAGA
CCACGCTGCTGGACGCCATCTCCGGGAGGCTGCGGCGCACTGGGACCCTGGAAGGGGAGGTGTTTGTGAA
TGGCTGCGAGCTGCGCAGGGACCAGTTCCAAGACTGCTTCTCCTACGTCCTGCAGAGCGACGTTTTTCTG
AGCAGCCTCACTGTGCGCGAGACGTTGCGATACACAGCGATGCTGGCCCTCTGCCGCAGCTCCGCGGACT
TCTACAACAAGAAGGTAGAGGCAGTCATGACAGAGCTGAGCCTGAGCCACGTGGCGGACCAAATGATTGG
CAGCTATAATTTTGGGGGAATTTCCAGTGGCGAGCGGCGCCGAGTTTCCATCGCAGCCCAACTCCTTCAG
GACCCCAAGGTCATGATGCTAGATGAGCCAACCACAGGACTGGACTGCATGACTGCAAATCAAATTGTCC
TTCTCTTGGCTGAGCTGGCTCGCAGGGACCGAATTGTGATTGTCACCATCCACCAGCCTCGCTCTGAGCT
CTTCCAACACTTCGACAAAATTGCCATCCTGACTTACGGAGAGTTGGTGTTCTGTGGCACCCCAGAGGAG
ATGCTTGGCTTCTTCAATAACTGTGGTTACCCCTGTCCTGAACATTCCAATCCCTTTGATTTTTACATGG
ACTTGACATCAGTGGACACCCAAAGCAGAGAGCGGGAAATAGAAACGTACAAGCGAGTACAGATGCTGGA
ATGTGCCTTCAAGGAATCTGACATCTATCACAAAATTCTGGAGAACATTGAAAGAGCACGATACCTGAAA
ACCTTACCCACGGTTCCTTTCAAAACAAAAGATCCTCCTGGGATGTTCGGCAAGCTTGGTGTCCTGCTGA
GGCGAGTAACAAGAAACTTAATGAGGAATAAGCAGGCAGTGATTATGCGTCTCGTTCAGAATCTGATCAT
GGGCCTCTTCCTCATTTTCTACCTTCTCCGCGTCCAGAACAACACGCTAAAGGGCGCTGTGCAGGACCGC
GTGGGGCTGCTCTATCAGCTTGTGGGTGCCACCCCATACACCGGCATGCTCAATGCTGTGAATCTGTTTC
CCATGCTGAGAGCCGTCAGCGACCAGGAGAGTCAGGATGGCCTGTATCATAAGTGGCAGATGCTGCTCGC
CTACGTGCTACACGTCCTCCCCTTCAGCGTCATCGCCACGGTCATTTTCAGCAGTGTGTGTTATTGGACT
CTGGGCTTGTATCCTGAAGTTGCCAGATTTGGATATTTCTCTGCTGCTCTTTTGGCCCCTCACTTAATTG
GAGAATTTCTAACACTTGTGCTGCTTGGTATAGTCCAAAACCCTAATATTGTCAACAGTATAGTGGCTCT
GCTCAGCATCTCTGGGCTGCTTATTGGATCTGGATTTATCAGAAACATACAAGAAATGCCCATTCCTTTA
AAAATCCTGGGTTATTTTACATTCCAAAAATACTGTTGTGAGATTCTCGTGGTCAATGAGTTTTACGGCC
TGAACTTCACTTGTGGTGGATCCAACACCTCTATGCTAAATCACCCGATGTGCGCCATCACCCAAGGGGT
CCAGTTCATCGAGAAAACCTGCCCAGGTGCTACATCCAGATTCACGGCAAACTTCCTCATCTTATATGGG
TTTATCCCAGCTCTGGTCATCCTAGGAATAGTGATTTTTAAAGTCAGGGACTACCTGATTAGCAGATAG

Translation (652 aa):
MGELPFLSPEGARGPHINRGSLSSLEQGSVTGTEARHSLGVLHVSYSVSNRVGPWWNIKSCQQKWDRQIL
KDVSLYIESGQIMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCFSYVLQSDVFL
SSLTVRETLRYTAMLALCRSSADFYNKKVEAVMTELSLSHVADQMIGSYNFGGISSGERRRVSIAAQLLQ
DPKVMMLDEPTTGLDCMTANQIVLLLAELARRDRIVIVTIHQPRSELFQHFDKIAILTYGELVFCGTPEE
MLGFFNNCGYPCPEHSNPFDFYMDLTSVDTQSREREIETYKRVQMLECAFKESDIYHKILENIERARYLK
TLPTVPFKTKDPPGMFGKLGVLLRRVTRNLMRNKQAVIMRLVQNLIMGLFLIFYLLRVQNNTLKGAVQDR
VGLLYQLVGATPYTGMLNAVNLFPMLRAVSDQESQDGLYHKWQMLLAYVLHVLPFSVIATVIFSSVCYWT
LGLYPEVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSIVALLSISGLLIGSGFIRNIQEMPIPL
KILGYFTFQKYCCEILVVNEFYGLNFTCGGSNTSMLNHPMCAITQGVQFIEKTCPGATSRFTANFLILYG
FIPALVILGIVIFKVRDYLISR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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