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Report for CCDS52408.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52408.2 Reviewed, update pending Mus musculus 7 Fbrs 23 108 98 CCDS HistoryNCBI Gene:14123Re-query CCDS DB by CCDS ID:52408.2See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 52408.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000205432.2 ENSMUSP00000145783.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205432.2Link to Ensembl Protein Viewer:ENSMUSP00000145783.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000205432Re-query CCDS DB by Protein ID:ENSMUSP00000145783
Original member Current member NCBI NM_010183.2 NP_034313.2 Pending alive Link to Nucleotide Sequence:NM_010183.2Link to Protein Sequence:NP_034313.2Re-query CCDS DB by Nucleotide ID:NM_010183Re-query CCDS DB by Protein ID:NP_034313Link to BLAST:NP_034313.2

Chromosomal Locations for CCDS 52408.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127479199 127479645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127479936 127480115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127480867 127480902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127480989 127481018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127482783 127482831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127482921 127483221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127484542 127484840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127485040 127485242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127485353 127485397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127485594 127485689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127485928 127485996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127486860 127486889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127487265 127487336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127487665 127487782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127487874 127487954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127489167 127489250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127489388 127489595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127489689 127490283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGGAGACGGCCGCGGCCCCAGGCCCGGGCTGGGCAGCTGAAGGGGAGCGGCGACGGAGACGCTGCTCGC
GGCGAGACCGTGATCGGGAGCAGCGGCGCCGCCGAGGTCCAGGCGGTGACGCGCCCCGGGCCTTGTTGGC
CGCCCCGCGAGGCTCTTCATCCTCCTCGTCACCGCCGCCGCCCGCCCGTCCCTGGTCGTCAGCTTCATCT
GGAGAGCGGCCTGGGGGCCTACGACGGCGGCGGCCCCGACCCAGGCCTCGACCCCCGAGACCGCGAGCTC
GGAAGCGGCCTGCCGGTTCGGGCAGCCGCGGAGAGGAAGAGGACGAGGAGGAAGAGGGGGGCGCAGACGA
CGGAGAAGCCGAGGAGGAGCCTGAGGAGGAGGAAGAGGAGGAAGACCTGATCGATGGTTTTGCCATCGCT
AGCTTTGCCAGCCTTGAGGCCTTGCAGAAGGATGCATCTCTTCAGCCCCCAGAACGACTGGAACATCGGC
TGAAGCATTCTGGGAAACGGAAGAGGGGGGGCTCCAGTGGGGCCACTGGGGAACCAGGGGACAGCTCAGA
CCGTGAGCCTGGCCGACCCTCTGGGGATAGGCCCCGTAAATGGCCCAATAAGCGAAGAAGGAAAGAGGCC
TTCTCCCGTCACTCTCTGGAAGCTGGATATATATGTGACGCAGAAAGTGATCTGGATGAGAGGGTCTCAG
ATGATGACCTCGACCCTTCCTTCACTGTCTCGACCAGCAAAGCCTCGGGTCCTCATGGCACCTTCAATGG
GAACTGTGAAGCAAAACTGTCTGTGGTCCCTAAAGTGTCGGGCCTGGAGCGGAGCCAAGAGCAGCCCCCG
GGGCCCGACCCGCTGCTAGTGCCTTTCCCCCCAAAGGATCCACCACCTCCACCAGCCCCTCGGCCTCCTG
TCTCATCCCCTACACCCTTACCAGCTACCCCCAGTCTGCCACCCCCACCCCAGCACCAGCTGCAGCTTCG
GGTCTCACCCTTCGGCCTCCGAAGTTCTCCCTATGGCAGCAGCCTGGACCTCAGCACTGGCAGCTCTTCA
CGGCCGCCCCCCAAGGCCCCGGCCCCTCCCGTGGCTCAGCCTCCCCCCTCATCATCCTCTTCGTCCTCCT
CCTCCTCATCTGCCTCCTCCTCGTCCGCGCAGCTCACCCACCGGCCCCCGACGCCCTCACTGCCCCTGCC
TCTGTCCACCCACAGCTTTCCTCCCCATGGGTTGCGCCCACCACCACCCCACCACCCTTCCTTGGTCTCC
CCTGGCCCCACCCTGCCCCCACCCCCACCTCTGCTGCAGGTGCCAGGGCACCCTGGGGCCTCAGCTGCTA
ACGCCCTTTCTGAGCAGGACCTGATCGGCCAGGACCTGAACTCACGCTACCTGAATGCCCAGGGTGGCCC
TGAGGTGGTGGGAGCAGGGGGCTCGGCCCGGCCCCTGGCCTTCCAGTTCCACCAGCACAACCACCAGCAC
CAGCACACCCACCAGCACACCCACCAGCACTTCACTCCCTACCCCCCGGGCCTGCTGCCTCCCCACGGCC
ACATGTTTGAGAAATACCCAGGAAAGATGGAAGGCCTTTTCCGACATAATCCGTACATGGCCTTCCCTCC
CGCTGTGCCCGGGCTCCCTCCGGGTCTCCCACCAGCTGTCTCCTTTGGCTCCCTGCAGGGGGCCTTCCAG
CCCAAGAACACGAACCCTGAGCTGCCACCACGACTGGGGCCAGTGCTGAGCGGGCTACCCCAGAAGGGGA
CACAGATCCCTGATCATTTCCGGCCACCTTTGAGGAAACCAGGAAAATGGTGTGCCATGCACGTTCGTGT
GGCTTACATGATCCTGAGACACCAGGAAAAGATGAAGGGTGACTCCCACAAGCTTGACTTTCGGAACGAC
CTCCTACCCTGCCTTCCGGGGCCCTATGGGGCCCTGCCCCCTGGGCAGGAGCTCTCCCACCCGGCCTCTC
TCTTCACTGCGACTGGAGCCGTCCATGCTGCAGCCAATCCTTTCACAACAGCTCCTGGGGCCCATGGACC
CTTCTTGAGCCCCAGTACCCACATTGATCCCTTTGGGCGTCCCACAAGCTTTGCCTCCTTGGCTGCTCTC
TCCAACGGGGCCTTTGGAGGCCTGGGCAGCCCCACATTCAACTCCAGCGCCGTCTTTGCCCAGAAAGAAA
GCCCAGGAGCCCCACCAGCCTTTGCCTCCCCACCAGACCCATGGGGCCGCCTGCACCGCAGTCCTCTTGC
CTTTCCTGCTTGGGTCCGTCCCCCTGAAACTGCCCGGACACCAGGCTCAGATAAGGAGCGACCTATGGAG
CGAAGAGAGCCCTCTGTCACCAAGGAGGAGAAGGACAGGGACCTCCCTTTCTCACGGCCTCAGCTTCGAG
TTTCTCCTGCTACTCCTAAGGCCAGGGCTGGCGAGGAAGGAGCCCGACCAGCCAAAGAGTCTGTGCGGGT
AAAAGAAGAGCGGAAAGAAGAGGCTGCTGCTGCTGCCGCCGCCGCTGCTGCCGCTGCAGCTGCTGCTGCT
GCTGCCGCTGCTGCCGCTGCTGCAACCACTGGGCCTCAAGGTCTTCACTTGCTTTTGGAGAGGCCTCGGC
CACCCCCATTTCTTGGCCCTAGCCTGCCAGAGCGCTGTGCAGGCTTCCCAGAGCCAACCTGGTTGGCAGG
GCCCCCACGCCTGGCCAGGCCACCACGCTTCTATGAGGCAGGTGAGGAGTTGACTGGACCAGGGGCCATG
GCTGCTGCCCGCCTCTATAGTCTAGACCCTGCTCATCCACTGCTATACAGCCGTTTGGCTCCTCCACCAC
CACCTACTGCAACTCCAGGAACCCCTCACCTTCTCAGCAAGACCCCACCAGGAGCCCTTTTAGGAGCACC
ACCACCTCTTGTGCCCGCCCCCCGGCCCAGTTCCCCACCTAGGGCCCCTGGCCCAGCCCGGGCTGACAGG
TGA

Translation (980 aa):
METAAAPGPGWAAEGERRRRRCSRRDRDREQRRRRGPGGDAPRALLAAPRGSSSSSSPPPPARPWSSASS
GERPGGLRRRRPRPRPRPPRPRARKRPAGSGSRGEEEDEEEEGGADDGEAEEEPEEEEEEEDLIDGFAIA
SFASLEALQKDASLQPPERLEHRLKHSGKRKRGGSSGATGEPGDSSDREPGRPSGDRPRKWPNKRRRKEA
FSRHSLEAGYICDAESDLDERVSDDDLDPSFTVSTSKASGPHGTFNGNCEAKLSVVPKVSGLERSQEQPP
GPDPLLVPFPPKDPPPPPAPRPPVSSPTPLPATPSLPPPPQHQLQLRVSPFGLRSSPYGSSLDLSTGSSS
RPPPKAPAPPVAQPPPSSSSSSSSSSSASSSSAQLTHRPPTPSLPLPLSTHSFPPHGLRPPPPHHPSLVS
PGPTLPPPPPLLQVPGHPGASAANALSEQDLIGQDLNSRYLNAQGGPEVVGAGGSARPLAFQFHQHNHQH
QHTHQHTHQHFTPYPPGLLPPHGHMFEKYPGKMEGLFRHNPYMAFPPAVPGLPPGLPPAVSFGSLQGAFQ
PKNTNPELPPRLGPVLSGLPQKGTQIPDHFRPPLRKPGKWCAMHVRVAYMILRHQEKMKGDSHKLDFRND
LLPCLPGPYGALPPGQELSHPASLFTATGAVHAAANPFTTAPGAHGPFLSPSTHIDPFGRPTSFASLAAL
SNGAFGGLGSPTFNSSAVFAQKESPGAPPAFASPPDPWGRLHRSPLAFPAWVRPPETARTPGSDKERPME
RREPSVTKEEKDRDLPFSRPQLRVSPATPKARAGEEGARPAKESVRVKEERKEEAAAAAAAAAAAAAAAA
AAAAAAAATTGPQGLHLLLERPRPPPFLGPSLPERCAGFPEPTWLAGPPRLARPPRFYEAGEELTGPGAM
AAARLYSLDPAHPLLYSRLAPPPPPTATPGTPHLLSKTPPGALLGAPPPLVPAPRPSSPPRAPGPARADR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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