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Report for CCDS23158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23158.1 Public Mus musculus 9 Zbtb16 23 108 98 CCDS HistoryNCBI Gene:235320Re-query CCDS DB by CCDS ID:23158.1Re-query CCDS DB by GeneID:235320See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093852.4 ENSMUSP00000091374.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093852.4Link to Ensembl Protein Viewer:ENSMUSP00000091374.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093852Re-query CCDS DB by Protein ID:ENSMUSP00000091374
Original member Current member EBI ENSMUST00000216150.1 ENSMUSP00000150887.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216150.1Link to Ensembl Protein Viewer:ENSMUSP00000150887.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216150Re-query CCDS DB by Protein ID:ENSMUSP00000150887
Original member Current member NCBI NM_001033324.3 NP_001028496.1 Accepted alive Link to Nucleotide Sequence:NM_001033324.3Link to Protein Sequence:NP_001028496.1Re-query CCDS DB by Nucleotide ID:NM_001033324Re-query CCDS DB by Protein ID:NP_001028496Link to BLAST:NP_001028496.1
Original member Current member NCBI NM_001364543.1 NP_001351472.1 Accepted alive Link to Nucleotide Sequence:NM_001364543.1Link to Protein Sequence:NP_001351472.1Re-query CCDS DB by Nucleotide ID:NM_001364543Re-query CCDS DB by Protein ID:NP_001351472Link to BLAST:NP_001351472.1

Chromosomal Locations for CCDS 23158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 48657142 48657371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48659673 48659840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48665155 48665325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48717283 48717369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48743464 48743561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48831743 48833010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGGATCTGACAAAGATGGGGATGATCCAGCTGCAGAACCCTAGCCACCCCACGGGGCTGCTGTGCAAGG
CCAATCAGATGCGACTGGCTGGGACTTTGTGCGATGTGGTCATCATGGTGGACAGCCAGGAGTTCCATGC
CCACCGGACGGTGCTAGCCTGCACCAGCAAGATGTTTGAGATCCTCTTCCACCGAAACAGCCAGCACTAT
ACTCTAGACTTCCTCTCGCCAAAAACCTTCCAGCAGATCCTGGAGTACGCCTACACGGCCACACTGCAAG
CCAAGGCGGAGGACCTGGATGACCTGCTGTATGCAGCTGAGATTTTAGAGATCGAATACCTGGAGGAGCA
GTGCCTGAAGATCCTGGAGACCATCCAGGCATCTGATGACAATGACACAGAGGCCACCATGGCTGACGGT
GGGGGCGAAGAAGAAGAGGACCGTAAGGCTCGATACCTCAAGAACATCTTTATCTCGAAGCATTCCAGCG
AGGAGAGTGGCTACGCCAGTGTGGCTGGACAGAGCCTCCCTGGGCCCATGGTGGACCAGAGCCCCTCAGT
CTCCACCTCTTTCGGTCTCTCAGCCATGAGTCCTACCAAGGCAGCCGTGGACAGCTTGATGAGTATAGGA
CAGTCACTCCTGCAAGGAACTCTTCAGCCACCTGCAGGGCCTGAGGAGCCCACACTGGCAGGGGGTGGGC
GACACCCTGGGGTGGCTGAGGTGAAGATGGAAATGATGCAGGTAGATGAAGCCCCTGGCCAGGACAGCCC
TGGGGCAGCTGAGTCTAGCATCTCAGGAGGGATGGGGGACAAGCTTGAAGAGAGGAGCAAAGAGGGGCCT
GGGACCCCGACTCGAGGCAGTGTCATCACTAGTGCCAGAGAGCTGCATTATGGGAGAGAGGAGAGTGGTG
AGCAGCTCTCGCCTCCTGTTGAAGCTGGCCAGGGACCCCCTGGGCGGCAGGAGCCCCTGGCACCCCCAGT
GGAGAAGCATTTGGGTATCTACTCGGTGCTGCCCAACCACAAGGCCGATGCTGTGTTGAGCATGCCGTCT
TCAGTGACGTCCGGTCTCCATGTGCAACCTGCCCTGGCAGTCTCCATGGACTTCAGCACCTACGGGGGTC
TGCTGCCTCAGGGCTTCATCCAGAGGGAGCTGTTCAGCAAGCTGGGGGAGCTGGCTGTGGGCATGAAGGC
TGAGAGCCGCCCTCTGGGGGAGCAGTGCAGCGTGTGTGGGGTCGAGCTTCCGGACAACGAGGCAGTGGAG
CAGCACAGGAAACTGCACAGTGGGATGAAAACATACGGGTGTGAACTCTGCGGAAAACGGTTCCTGGACA
GTTTGCGACTGAGAATGCATTTACTGGCTCATTCAGCGGGTGCCAAAGCCTTTGTGTGTGATCAATGCGG
TGCCCAGTTCTCAAAGGAGGATGCCCTGGAGACACACAGACAGACCCATACTGGCACGGACATGGCTGTC
TTCTGTCTGCTGTGTGGGAAACGCTTTCAGGCACAAAGCGCACTCCAGCAGCACATGGAGGTCCACGCAG
GCGTGCGCAGCTATATTTGCAGTGAGTGCAACCGCACCTTCCCCAGCCACACGGCTCTCAAGCGCCACCT
TCGCTCACATACAGGTGACCACCCATATGAGTGTGAGTTCTGCGGCAGCTGCTTCCGGGATGAGAGCACA
CTCAAGAGCCACAAGCGCATCCACACAGGGGAGAAGCCCTATGAGTGTAATGGCTGTGGCAAGAAGTTCA
GCCTCAAGCACCAGTTGGAGACGCACTACAGGGTTCACACAGGTGAGAAGCCCTTTGAGTGCAAACTCTG
CCACCAGCGCTCCCGAGACTACTCGGCCATGATCAAGCACCTGAGAACACACAACGGTGCCTCGCCATAC
CAGTGTACCATCTGCACGGAATACTGCCCCAGCCTCTCCTCCATGCAGAAACACATGAAGGGCCACAAGC
CGGAGGAGATCCCACCTGACTGGAGGATAGAGAAGACGTACCTCTACCTGTGTTATGTGTGA

Translation (673 aa):
MDLTKMGMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHY
TLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKILETIQASDDNDTEATMADG
GGEEEEDRKARYLKNIFISKHSSEESGYASVAGQSLPGPMVDQSPSVSTSFGLSAMSPTKAAVDSLMSIG
QSLLQGTLQPPAGPEEPTLAGGGRHPGVAEVKMEMMQVDEAPGQDSPGAAESSISGGMGDKLEERSKEGP
GTPTRGSVITSARELHYGREESGEQLSPPVEAGQGPPGRQEPLAPPVEKHLGIYSVLPNHKADAVLSMPS
SVTSGLHVQPALAVSMDFSTYGGLLPQGFIQRELFSKLGELAVGMKAESRPLGEQCSVCGVELPDNEAVE
QHRKLHSGMKTYGCELCGKRFLDSLRLRMHLLAHSAGAKAFVCDQCGAQFSKEDALETHRQTHTGTDMAV
FCLLCGKRFQAQSALQQHMEVHAGVRSYICSECNRTFPSHTALKRHLRSHTGDHPYECEFCGSCFRDEST
LKSHKRIHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEKPFECKLCHQRSRDYSAMIKHLRTHNGASPY
QCTICTEYCPSLSSMQKHMKGHKPEEIPPDWRIEKTYLYLCYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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