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Report for CCDS52903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52903.1 Public Mus musculus 9 Bfsp2 23 108 98 CCDS HistoryNCBI Gene:107993Re-query CCDS DB by CCDS ID:52903.1Re-query CCDS DB by GeneID:107993See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52903.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124310.4 ENSMUSP00000116249.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124310.4Link to Ensembl Protein Viewer:ENSMUSP00000116249.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000124310Re-query CCDS DB by Protein ID:ENSMUSP00000116249
Original member Current member NCBI NM_001002896.3 NP_001002896.1 Accepted alive Link to Nucleotide Sequence:NM_001002896.3Link to Protein Sequence:NP_001002896.1Re-query CCDS DB by Nucleotide ID:NM_001002896Re-query CCDS DB by Protein ID:NP_001002896Link to BLAST:NP_001002896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002896.1 416 Q6NVD9-1 416 100% 0 0

Chromosomal Locations for CCDS 52903.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103425141 103425144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103426557 103426777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103432659 103432790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103448549 103448710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103449805 103449961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103453062 103453144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103479735 103480226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAGCAAGAGGAGAGTGGCAGCGGACTTGCCCTCGGGAACCAACTCCAGCATGCCCGTGCAGAGGCACA
GGGTGTCATCCCTCAGGGGAACACACTCTCCATCCTCCCTGGATAGCCCCCCAGCATCCAGGACCAGTGC
TGTGGGTAGCCTCGTCCGTGCCCCTGGGGTCTATGTAGGAGTCGCACCCAGTGGTGGCATAGGTGGTCTC
GGTGCCCGAGTGACCCGCCGGGCCCTGGGCATCAGCAGTGTCTTTCTACAGGGCCTGCGGAGTTCAGGCC
TTGCCAACGTGCCTGCTCCGGGCCCAGAAAGGGATCACACTACTGTTGAGGACCTGGGGGGCTGCCTAGT
GGAATATATGACCAAGGTGCATGCTCTGGAGCAAGTCAGCCAGGAACTGGAAACACAACTGCGGGCTCAC
CTGGAGAGCAAGGCCAAGAGCTCTGGAGGCTGGGATGCCCTCCGCGCCTCCTGGGCCAGCAGCTACCAGC
AGGTGGGAGAGGCTGTCCTAGAAAACGCCCGGCTCCTGCTGCAGATGGAGACGATCCAGGCCGGTGCGGA
TGACTTTAAAGAGAGATATGAAAACGAGCAGCCATTCAGGAAGGCAGCGGAAGAGGAAGTAAGTTCCCTG
TACAAAGTCATCGATGAAGCTAATTTGACAAAGACGGATCTGGAGCATCAAATAGAAAGCCTGAAAGAAG
AACTGGGCTTTCTGTCAAGAAGCTATGAAGAGGATGTGAAGGTTCTGTACAAACAGCTGGCAGGGTCTGA
GCTGGAGCAAGCAGATGTCCCCATGGGCACCGGTCTGGATGATGTCCTTGAGACGATCCGAGTTCAGTGG
GAGAGAGATGTGGAAAAGAACCGAGCAGAAGCAGGAGCCTTGCTCCAAGCTAAGCAACAGACAGAGGTGG
TCCACGTATCCCAGACCCAAGAAGAAAAGCTGGCTGCTGCCCTCAGTGTAGAGTTACACGACACTTCACG
CCAAGTCCAGAGTCTCCAGGCTGAGACGGAATCTTTACGGGCTCTGAAACGAGGCCTGGAAAACAGCTTG
CACGACGCCCAGCACTGGCATGACATGGAACTGCAGAACCTGGGTGCCGTGGTGGGCAGGCTGGAGGCAG
AGCTGGCAGAGATCCGCTCAGAGACAGAACAGCAGCAGCAGGAGCGGGCACACCTGCTGGCGTGCAAGAG
CCAGCTACAGAAGGATGTGGCATCCTACCACGCCCTGCTGGACAGAGAGGAGAACAACTAA

Translation (416 aa):
MSKRRVAADLPSGTNSSMPVQRHRVSSLRGTHSPSSLDSPPASRTSAVGSLVRAPGVYVGVAPSGGIGGL
GARVTRRALGISSVFLQGLRSSGLANVPAPGPERDHTTVEDLGGCLVEYMTKVHALEQVSQELETQLRAH
LESKAKSSGGWDALRASWASSYQQVGEAVLENARLLLQMETIQAGADDFKERYENEQPFRKAAEEEVSSL
YKVIDEANLTKTDLEHQIESLKEELGFLSRSYEEDVKVLYKQLAGSELEQADVPMGTGLDDVLETIRVQW
ERDVEKNRAEAGALLQAKQQTEVVHVSQTQEEKLAAALSVELHDTSRQVQSLQAETESLRALKRGLENSL
HDAQHWHDMELQNLGAVVGRLEAELAEIRSETEQQQQERAHLLACKSQLQKDVASYHALLDREENN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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