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Report for CCDS23267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23267.1 Public Mus musculus 9 Cln6 23 108 98 CCDS HistoryNCBI Gene:76524Re-query CCDS DB by CCDS ID:23267.1Re-query CCDS DB by GeneID:76524See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034776.12 ENSMUSP00000034776.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034776.12Link to Ensembl Protein Viewer:ENSMUSP00000034776.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034776Re-query CCDS DB by Protein ID:ENSMUSP00000034776
Original member Current member NCBI NM_001033175.3 NP_001028347.1 Accepted alive Link to Nucleotide Sequence:NM_001033175.3Link to Protein Sequence:NP_001028347.1Re-query CCDS DB by Nucleotide ID:NM_001033175Re-query CCDS DB by Protein ID:NP_001028347Link to BLAST:NP_001028347.1

Chromosomal Locations for CCDS 23267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 62838881 62838954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62844570 62844684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62845954 62846052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62846966 62847154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62847585 62847640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62849109 62849231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 62850617 62850887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGAGGCGGCGACGCGGAGGCGGCAGCTCCTCGGAGCGGCGGGCGGCCCCGGTGTCGCGTTCGTGCAGG
CCAGGCATGGCTCTGTGAAGGCCGAGGACAAAGACCGCACAGCCCCCTTCCATCTTGACCTCTGGTTCTA
CTTCACACTGCAGAACTGGGTTCTGGACTTTGGCCGCCCCATTGCCATGCTGGTATTCCCGATCCAGTGG
TTTCCTCTCAACAAGCCAAGTGTCGGGGACTACTTTCACATGACCTACAACATCATCACGCCCTTCCTGC
TGCTAAAGCTTATTGAGCGGTCCCCCCGAACGCTGCCGCGGTCTATAGTCTATGTCAGCATCATCACTTT
CATCATGGGAGCCAGCATCCACCTGGTGGGAGACTCAGTCAACCATCGCCTGCTCTTCAGTGGGTACCAG
CACCACCTGTCCGTCAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGAGACTCTGATCGACTCCTTTG
AGCTGTTGTACTACTATGACGAGTACCTGGGCCACTGCATGTGGTACATCCCCTTCTTCCTCATCCTCTT
CATGTACTTCAGTGGCTGTTTCACCACCTGCAAGGCTGAGAGCCACATGCCAGGACCTGCCCTGCTCCTG
GTGGTGCCCAGTGGTCTGTACTACTGGTACCTGGTCACCGAGGGCCAGATCTTCATCCTCTTCATCTTCA
CCTTCTTCGCCATGCTGGCTCTCGTCTTGCACCAGAAGCGCAGGCGCCTCTTCCTGGACAGCAACGGCCT
CTTCCTCTTGTATTCCTTCGCGCTCACCCTCTCACTGGTGGCTCTGTGGGTGGCTTGGCTGTGGAATGAC
CCTGTACTCAGAAAGAAGTACCCTGGTGTCATCTATGTTCCTGAGCCCTGGGCCTTCTACACACTCCACG
TTAGCAGTCAACAGTGA

Translation (308 aa):
MEAATRRRQLLGAAGGPGVAFVQARHGSVKAEDKDRTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPIQW
FPLNKPSVGDYFHMTYNIITPFLLLKLIERSPRTLPRSIVYVSIITFIMGASIHLVGDSVNHRLLFSGYQ
HHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCMWYIPFFLILFMYFSGCFTTCKAESHMPGPALLL
VVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRRRLFLDSNGLFLLYSFALTLSLVALWVAWLWND
PVLRKKYPGVIYVPEPWAFYTLHVSSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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