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Report for CCDS45.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45.1 Public Homo sapiens 1 ACTRT2 24 110 108 CCDS HistoryNCBI Gene:140625Re-query CCDS DB by CCDS ID:45.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378404.4 ENSP00000367658.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378404.4Link to Ensembl Protein Viewer:ENSP00000367658.2Re-query CCDS DB by Nucleotide ID:ENST00000378404Re-query CCDS DB by Protein ID:ENSP00000367658
Original member Current member NCBI NM_080431.5 NP_536356.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080431.5Link to Protein Sequence:NP_536356.3Re-query CCDS DB by Nucleotide ID:NM_080431Re-query CCDS DB by Protein ID:NP_536356Link to BLAST:NP_536356.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536356.3 377 Q8TDY3 377 100% 0 0

Chromosomal Locations for CCDS 45.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 3021687 3022820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGTTTAATCCGCACGCTTTAGACTCCCCGGCTGTGATTTTTGACAATGGCTCGGGGTTCTGCAAAGCGG
GCCTGTCTGGGGAGTTTGGACCCCGGCACATGGTCAGCTCCATCGTGGGGCACCTGAAATTCCAGGCTCC
CTCAGCAGAGGCCAACCAGAAGAAGTACTTTGTGGGGGAGGAGGCCCTGTACAAGCAGGAGGCCCTGCAG
CTGCACTCCCCTTTCGAGCGTGGCCTGATCACAGGGTGGGATGACGTGGAGAGACTCTGGAAGCACCTCT
TTGAGTGGGAGCTAGGCGTGAAACCCAGCGACCAGCCCCTGCTTGCAACGGAGCCCTCCCTGAACCCCAG
GGAGAACCGTGAGAAGATGGCAGAAGTCATGTTCGAGAACTTCGGCGTGCCCGCTTTCTACCTGTCGGAC
CAGGCGGTGCTGGCTCTCTACGCCTCTGCCTGTGTCACGGGCCTGGTGGTGGACAGCGGGGATGCGGTCA
CCTGCACTGTCCCCATCTTTGAGGGTTACTCCCTGCCCCACGCAGTCACCAAGCTCCACGTGGCGGGCAG
GGACATCACGGAGCTCCTCATGCAGCTGCTCCTGGCCAGCGGCCACACCTTCCCCTGCCAGCTGGACAAG
GGTCTCGTGGACGACATCAAAAAGAAGCTGTGCTACGTGGCCTTGGAGCCCGAGAAGGAGCTTTCCCGGA
GGCCGGAGGAGGTCCTGAGGGAGTACAAGCTGCCCGACGGGAACATCATCAGCCTCGGGGACCCGCTGCA
CCAGGCGCCCGAGGCCCTGTTCGTGCCCCAGCAGCTGGGCAGCCAGAGCCCCGGGCTCTCGAATATGGTC
TCCAGCAGCATCACCAAGTGTGATACCGACATCCAGAAGATCCTCTTTGGGGAGATTGTGCTGTCGGGGG
GCACTACCCTGTTCCACGGGCTGGATGACCGGCTTCTCAAGGAGCTGGAGCAGCTGGCCTCCAAGGACAC
CCCCATCAAGATCACGGCTCCCCCCGACCGGTGGTTCTCCACCTGGATTGGAGCCTCCATCGTCACCTCT
CTGAGTAGCTTCAAGCAGATGTGGGTCACCGCCGCAGACTTCAAGGAGTTTGGGACCTCCGTGGTGCAGA
GAAGATGCTTCTGA

Translation (377 aa):
MFNPHALDSPAVIFDNGSGFCKAGLSGEFGPRHMVSSIVGHLKFQAPSAEANQKKYFVGEEALYKQEALQ
LHSPFERGLITGWDDVERLWKHLFEWELGVKPSDQPLLATEPSLNPRENREKMAEVMFENFGVPAFYLSD
QAVLALYASACVTGLVVDSGDAVTCTVPIFEGYSLPHAVTKLHVAGRDITELLMQLLLASGHTFPCQLDK
GLVDDIKKKLCYVALEPEKELSRRPEEVLREYKLPDGNIISLGDPLHQAPEALFVPQQLGSQSPGLSNMV
SSSITKCDTDIQKILFGEIVLSGGTTLFHGLDDRLLKELEQLASKDTPIKITAPPDRWFSTWIGASIVTS
LSSFKQMWVTAADFKEFGTSVVQRRCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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