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Report for CCDS48674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48674.1 Public Mus musculus 10 Fgd6 23 108 98 CCDS HistoryNCBI Gene:13998Re-query CCDS DB by CCDS ID:48674.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020208.4 ENSMUSP00000020208.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020208.4Link to Ensembl Protein Viewer:ENSMUSP00000020208.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020208Re-query CCDS DB by Protein ID:ENSMUSP00000020208
Original member Current member NCBI NM_053072.3 NP_444302.4 Accepted alive Link to Nucleotide Sequence:NM_053072.3Link to Protein Sequence:NP_444302.4Re-query CCDS DB by Nucleotide ID:NM_053072Re-query CCDS DB by Protein ID:NP_444302Link to BLAST:NP_444302.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444302.4 1399 Q69ZL1-1 1399 100% 0 0

Chromosomal Locations for CCDS 48674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 94036295 94036310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94043302 94045633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94074183 94074330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94089577 94089644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94089732 94089762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94100402 94100553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94103242 94103398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94105985 94106072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94120453 94120503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94123239 94123297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94123544 94123615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94124890 94124958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94125549 94125632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94127369 94127448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94133280 94133382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94134001 94134144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94135017 94135119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94137436 94137563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94138284 94138412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94139739 94139887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94141753 94141789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4200 nt):
ATGACTTCTGCCGCGGAGCTTAAGAAGCCACCATTGGCTCCCAAGCCAAAGTTAGTGGGGACCAATAATA
AGCCACCTCCCCCTCCTATTGCACCTAAACCGGACATTGGCAGTGCTAGTGTTCCACGGTTAACGAAGAA
GACCAAACCGGCAATTGCGCCAAAACCAAAAGTCCCGACAAACTCAGTTGTTCAAGACATTAAGCATCCA
CCCTCAAAGAAACCTACTTTGAACCTGGAGGAAAGGGAGCCAGAATTACCCGAGAGCACTGGCAAGTCTA
ATTGCAAGGATGTCAGGGATCCACACAGTGATTATATTTTACCAACGTGTTCCTGCAGTTCTGGGTGTAT
TCACGAGCCTAGGACTCGAGAAACCCAGTGTGTAGAGCAGCTTGTTTTAGAGCCTCTGGGAATGAAGGAA
AATTTAGAGAATAGTAAAAATGGTGAGTCCTCAAAAAGGGGGAGTAGCTGGGATTCAAGCAGCGAAAAGT
GCCGGGGCCAGAGTGGAGTTGTTTTAAAGGCAAGCATCTTAGAAGAGAAGCTCAAAGAGGTCCTGACGCA
GCAGCGATCACCTTGTGGTTCCCCGGGGAGGCACAGAGCTCCAAAAAAACCAGAAATGAATGGTGACCAT
AGTTGCACCAGGCAGATCAGAATTGAATTTGCAGATGTGTCTTCTTCCCTGACCGGCTTTGAAAAAGTTC
CCGCTCATCACAACTGCCACCCACAACTTCCTAGGGATGAATCTCAGACTCTCAAGACTTGTCAAGATGG
CAGTGCAGAGAGCCGTGGTCACACTGATTCATGTGAACCGGAGAACAAAAGAGTGGCTTCAGATGGAATT
AGTCAGAAGACAGAGGTCAAAGGTCTCGGTCCTTTAGAAATCCACTTACTACCGTATACCTCAAAGTTTC
CAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGCATGTAGATACTCCTGG
TGAAAGCACTGAAGAGCCAGGGAACTCAAACAATGGCTCTTCTTGCCTCCTGGAGGATTATTGTTTGAAA
AACAATAAAGTCAGTGTTCTTCGTCAGAATGCTTTGTATAACCAGGGACCAGTGGACGAGGTGAGGCCAG
CAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCGGACAGGACTCAGTCGGCTCACAGAAAGCTGT
GCAGCAGCAAACGCCTTCTTTAGATACAGATTCTAGTTTGACTTCTGACAGCAGTGGTTCTGGCGTGTCA
CCTGCTGTGGACAAAGAGACTACTTACACACAGTGCAGTACTCAGCCTTTGAGCTTGCCTAAGCAAGTCA
CATCAGCCTGCACTGACCAGCCACCAGCTACCTGTAACCCGGAAGTGTCAGCTCCTCCCATACAAAAGGA
ATCTTCCTCCTCGAGAATCATTCCCAAAAAACCTCAAAGACACAGCTTGCCTGCAGCAGGGGTGCTTAAA
AAGGCTGCTTCGGAGGAGCTTGTAGAAAAGAGCTCTTCAGGTAAGGAGACAAATGTCGAGAAAGGTCTGC
ACAGAAACTACCTTCACCATCCGGGGCCCCCAAACCATGGCGCGTCAGCATCACCCTTTGATATGCCCAA
CCCGACTTCAGAGAAGCCAGTGTGGAAGTTACCTCATCCTATTCTACCTTTTTCAGGGAGCCCAGAGGCC
TTGAAACGCGTCACTTTATCCTTAAATAACGAGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATCCC
TGTCTGCCGTGGATGCGGACCGGTGTAACAAGCCTTGCAAAGACCCTCCGAAGAAAACTTCTTTTAAAAA
GTTGATCAATGTGAAACTGTCCATTGGCTTCATAAAGAGCGACTTTCAGAAAATTAGGTCGAAAAGCTGC
CAACACGGGGATGTCTCTGCAGGACATCCGCTCGCTAGAGAGCCAAAAGGACTTGAAAGTGATTGGCAAG
GTTTGGCTACAGGAGAAGAGAAGAGAAGTAAGCCCACGAAGGCACATTCTGCAGAAAACTGCAGCCTGGA
ATCTCAAAAGGTGAAGTCCTGGGGCCAGAGCAGTGCAGTTAACGGTCAGAGGGCGGAGTCTTTGGATGAC
CGGATTCTCTCCAGGCACACGTCCTGTACAGGCGACTTCGGGCCAGAGTATGAAAATGTCCGCCATTATG
AGGAGATACCCGAGTATGAGAATTTGCCCTTTGTCATGGCTGGAAGGAACACTCCGGACTTGGGATGGCA
GAACTCCAGCAGTGTGGAGGACACTGATGCAAGTCTATATGAAGTAGAAGAGCCCTACAATGCTCCAGAT
GGCCAGCTGCAACTTGATCCTAGACATCAGCCTTGCAGTTCTGGAACATCCCAGGAGGGGAAGGATGCTC
TCCATCTTGGCCTCAGTGACCTGCCTTCTGATGAGGAAGTCATCAATAGTTCTGATGAAGATGATGTCAG
CTCCGAGTCCAGTAAAGGCGAGCCAGACCCCCTGGAGGATAAACAGGATGAAGATGCTGGGATGAAAAGC
AAAGTTCATCATATTGCCAAGGAGATCATGAGCTCCGAGAAAGTGTTTGTGGATGTGTTAAAGCTTTTGC
ATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGACCGGAT
CCTTAACCAGATCCTGTACTACCTGCCTCAGCTGTACGAGCTCAACCGGGATCTCCTGAAGGAACTGGAA
GAGCGAATGCTCACCTGGACAGAACAACAAAGAATTGCTGATATCTTTGTAAAGAAGGGGCCATACTTAA
AAATGTATTCCACATACATCAAAGAATTTGATAAGAACGTAGCTTTGCTGGATGAGCAGTGCAAGAAAAA
TCCAGGATTTGCTGCAGTTGTCAGAGAATTCGAGATGAGCCCTCGATGTGCCAACCTGGCCCTGAAGCAC
TACCTGCTAAAGCCAGTTCAGAGGATCCCTCAGTACAGGCTGCTACTGACAGATTACTTAAAGAACCTTC
TAGAAGACTCTGTAGATCACAGAGACACCCAAGATGCCCTGGCTGTTGTCATAGAGGTAGCTAACCATGC
CAATGACACCATGAAGCAAGGGGACAACTTTCAGAAGCTCATGCAGATTCAGTACAGCTTAAGTGGACAC
CATGAAATTGTGCAACCCGGGCGGGTTTTTCTTAAAGAAGGCACCCTGATGAAGCTGTCTCGGAAAGTCA
TGCAGCCCCGGATGTTTTTCCTGTTTAACGATGCTCTTCTCTACACCACACCCATGCAGTCTGGGATGTA
CAAACTGAACAACATGCTCTCGCTGGCTGGAATGAAGGTCAGAAAACCTACCCAGGAGGCATATCAGAAC
GAGTTAAAGATTGAAAGTGTAGAGCGTTCTTTCATCCTCTCAGCTAGTTCTGCCGCAGAAAGAGATGACT
GGCTGGAGGCCATATCCAGCTCCATAGAAGAGTATGCCAAGAAAAGAATCACATTCTGCCCCAGCAGGAG
TCTTGACGAGGACTCAGAAAGGAAAGAAGAAGTTAGCCCCCTCGGGGCAAAGGCTCCCATCTGGATCCCA
GACACCAGAGCCACCATGTGTATGATTTGCACAAGTGAATTCACCCTGACCTGGAGAAGACACCACTGCA
GGGCCTGTGGGAAGATTGTGTGCCAAGCTTGCTCATCAAACAAGTATGGCTTAGATTACCTGAAAGGGCA
ACTGGCAAGAGTGTGCGAGCACTGCTTCCAAGAGCTACAGAAATTAGATCACCAGCTGTCGCCTAGGGTT
GGGTCTCCCGGAAATCACAAGTCTCCTTCAAGTGCCTTGTCGTCAGTCTTACATAGCATCCCGTCAGGGA
GGAAGCAGAAGAAAATCCCCGCTGCTCTCAAAGAAGTGTCAGCAAACACAGAAGACTCCACTATGAGCGG
CTACCTCTACAGATCCAAGGGCAGTAAAAAGCCATGGAAACACTTATGGTTTGTCATCAAAAACAAAGTA
CTCTACACATATGCTGCAAGCGAGGACGTGGCAGCTTTGGAAAGTCAGCCTTTATTAGGCTTCACCGTCA
CTCTAGTCAAGGATGAGAACTCAGAGTCTAAAGTGTTTCAGCTGCTGCACAAAGGCATGGTGTTTTACGT
ATTTAAGGCAGACGATGCCCACTCCACGCAGAGGTGGATAGACGCATTTCAGGAAGGCACAGTATTGTAG

Translation (1399 aa):
MTSAAELKKPPLAPKPKLVGTNNKPPPPPIAPKPDIGSASVPRLTKKTKPAIAPKPKVPTNSVVQDIKHP
PSKKPTLNLEEREPELPESTGKSNCKDVRDPHSDYILPTCSCSSGCIHEPRTRETQCVEQLVLEPLGMKE
NLENSKNGESSKRGSSWDSSSEKCRGQSGVVLKASILEEKLKEVLTQQRSPCGSPGRHRAPKKPEMNGDH
SCTRQIRIEFADVSSSLTGFEKVPAHHNCHPQLPRDESQTLKTCQDGSAESRGHTDSCEPENKRVASDGI
SQKTEVKGLGPLEIHLLPYTSKFPTPKPRKTHAAARLRRQKHVDTPGESTEEPGNSNNGSSCLLEDYCLK
NNKVSVLRQNALYNQGPVDEVRPANQRALTGDSNSGGQDSVGSQKAVQQQTPSLDTDSSLTSDSSGSGVS
PAVDKETTYTQCSTQPLSLPKQVTSACTDQPPATCNPEVSAPPIQKESSSSRIIPKKPQRHSLPAAGVLK
KAASEELVEKSSSGKETNVEKGLHRNYLHHPGPPNHGASASPFDMPNPTSEKPVWKLPHPILPFSGSPEA
LKRVTLSLNNEPSVSLTKPRAKSLSAVDADRCNKPCKDPPKKTSFKKLINVKLSIGFIKSDFQKIRSKSC
QHGDVSAGHPLAREPKGLESDWQGLATGEEKRSKPTKAHSAENCSLESQKVKSWGQSSAVNGQRAESLDD
RILSRHTSCTGDFGPEYENVRHYEEIPEYENLPFVMAGRNTPDLGWQNSSSVEDTDASLYEVEEPYNAPD
GQLQLDPRHQPCSSGTSQEGKDALHLGLSDLPSDEEVINSSDEDDVSSESSKGEPDPLEDKQDEDAGMKS
KVHHIAKEIMSSEKVFVDVLKLLHIDFRGAVAHASRQLGKPVIEDRILNQILYYLPQLYELNRDLLKELE
ERMLTWTEQQRIADIFVKKGPYLKMYSTYIKEFDKNVALLDEQCKKNPGFAAVVREFEMSPRCANLALKH
YLLKPVQRIPQYRLLLTDYLKNLLEDSVDHRDTQDALAVVIEVANHANDTMKQGDNFQKLMQIQYSLSGH
HEIVQPGRVFLKEGTLMKLSRKVMQPRMFFLFNDALLYTTPMQSGMYKLNNMLSLAGMKVRKPTQEAYQN
ELKIESVERSFILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRSLDEDSERKEEVSPLGAKAPIWIP
DTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKGQLARVCEHCFQELQKLDHQLSPRV
GSPGNHKSPSSALSSVLHSIPSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKV
LYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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