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Report for CCDS39434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39434.1 Public Mus musculus 6 Ing3 23 108 98 CCDS HistoryNCBI Gene:71777Re-query CCDS DB by CCDS ID:39434.1Re-query CCDS DB by GeneID:71777See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031680.9 ENSMUSP00000031680.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031680.9Link to Ensembl Protein Viewer:ENSMUSP00000031680.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031680Re-query CCDS DB by Protein ID:ENSMUSP00000031680
Original member Current member NCBI NM_023626.4 NP_076115.3 Accepted alive Link to Nucleotide Sequence:NM_023626.4Link to Protein Sequence:NP_076115.3Re-query CCDS DB by Nucleotide ID:NM_023626Re-query CCDS DB by Protein ID:NP_076115Link to BLAST:NP_076115.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076115.3 421 Q8VEK6 421 100% 0 0

Chromosomal Locations for CCDS 39434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 21949766 21949793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21950038 21950109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21952129 21952229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21953763 21953828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21965734 21965830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21967627 21967698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21968885 21969004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21969278 21969435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21969914 21970107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21971107 21971308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21971811 21971849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21973583 21973699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGTTGTACCTAGAGGACTATTTGGAAATGATTGAGCAGCTTCCGATGGACCTACGGGACCGCTTCACGG
AGATGCGCGAGATGGATCTGCAGGTGCAGAATGCAATGGATCAACTAGAACAAAGAGTCAGTGAGTTCTT
TATGAATGCAAAGAAGAATAAACCCGAGTGGCGAGAAGAACAGATGGCATCCATCAAAAAAGACTACTAT
AAAGCTTTGGAAGATGCAGATGAGAAAGTACAGTTGGCAAACCAGATTTATGATTTGGTAGATCGCCACT
TGAGAAAGCTGGATCAGGAACTGGCCAAGTTTAAAATGGAGCTGGAAGCCGATAATGCTGGAATTACAGA
AATACTAGAGAGGCGATCTTTGGAATTAGATGCTCCTTCGCAGCCAGTGAACAATCACCACGCTCATTCA
CATACTCCCGTGGAAAAAAGGAAATATAATCCAACTTCTCACCATGCAGCAGCAGACCATATCCCTGAGA
AGAAATTCAAATCTGAAGCGCTGCTGTCCACCCTTACATCTGACGCTTCCAAGGAGAACACGCTGGGTTG
TCGGAACAATAATTCCACAGCTTCCTGCAACAATGCTTACAATGTGAACTCGTCCCAGCCCCTGGCCTCC
TATAACATTGGTTCATTATCTTCAGGGGCTGGCGCAGGGGCCATCACCATGGCGGCAGCACAGGCCGTGC
AAGCGACAGCACAGATGAAAGAAGGGCGAAGAACATCGAGTTTAAAAGCCAGTTACGAAGCATTTAAGAA
CAATGACTTCCAGCTGGGAAAAGAATTTTCCATACCCAGAGAAACAGCTGGCTACTCCTCCTCATCGGCA
CTCATGACAACCTTAACCCAGAATGCCAGTTCCTCCGCCACGGACTCGCGGAGTGGCAGGAAGAGCAAAA
ACAACACCAAGTCTTCAAGCCAGCAGTCGTCGTCCTCCTCCTCCTCGTCGTCCTCTTCCTCCTTATCTCT
GTGTTCATCGTCTTCAACTGTAGTACAAGAAGTTTCCCAGCAAGCAACTGTAGTGCCCGAATCTGACTCC
AACAGTCAAGTCGATTGGACTTACGACCCAAATGAACCTCGGTATTGCATCTGTAATCAGGTATCCTATG
GAGAGATGGTGGGATGTGATAACCAAGATTGTCCAATAGAGTGGTTCCACTATGGGTGTGTTGGCTTGAC
CGAAGCGCCGAAGGGGAAGTGGTTCTGTCCGCAGTGCACCGCTGCCATGAAGAGAAGAGGCAGTCGGCAC
AAATAG

Translation (421 aa):
MLYLEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYY
KALEDADEKVQLANQIYDLVDRHLRKLDQELAKFKMELEADNAGITEILERRSLELDAPSQPVNNHHAHS
HTPVEKRKYNPTSHHAAADHIPEKKFKSEALLSTLTSDASKENTLGCRNNNSTASCNNAYNVNSSQPLAS
YNIGSLSSGAGAGAITMAAAQAVQATAQMKEGRRTSSLKASYEAFKNNDFQLGKEFSIPRETAGYSSSSA
LMTTLTQNASSSATDSRSGRKSKNNTKSSSQQSSSSSSSSSSSSLSLCSSSSTVVQEVSQQATVVPESDS
NSQVDWTYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWFCPQCTAAMKRRGSRH
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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