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Report for CCDS25032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25032.1 Public Mus musculus 11 Rap1gap2 23 108 98 CCDS HistoryNCBI Gene:380711Re-query CCDS DB by CCDS ID:25032.1Re-query CCDS DB by GeneID:380711See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25032.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102521.8 ENSMUSP00000099580.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102521.8Link to Ensembl Protein Viewer:ENSMUSP00000099580.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102521Re-query CCDS DB by Protein ID:ENSMUSP00000099580
Original member Current member NCBI NM_001015046.3 NP_001015046.1 Accepted alive Link to Nucleotide Sequence:NM_001015046.3Link to Protein Sequence:NP_001015046.1Re-query CCDS DB by Nucleotide ID:NM_001015046Re-query CCDS DB by Protein ID:NP_001015046Link to BLAST:NP_001015046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015046.1 712 Q5SVL6-1 712 100% 0 0

Chromosomal Locations for CCDS 25032.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74388349 74388357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74388783 74388859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74392220 74392346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74393045 74393162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74393369 74393482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74395779 74395897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74397357 74397494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74405723 74405857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74407311 74407397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74407888 74407959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74412297 74412452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74414391 74414520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74416232 74416332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74422430 74422513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74425182 74425235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74425912 74425990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74435701 74435804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74436924 74437136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74437431 74437463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74438264 74438308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74441750 74441785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74484887 74484971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74567216 74567238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGCTGGCGGGTCTGAAGGTCAAGAAGCAGGAGCTGGCCAACAGCTCGGATGTGACCCTCCCAGATCGGC
CACTGTCCCCTCCTCTCACTGCTCCCCCGACCATGAAGTCTGCGGAGTTCTTCGAGATGCTGGAGAAAAT
GCAGGGAATCAAGCTTGAAGAGCAGAGGCCAGGACCCCAGAAGAACAAGGATGACTATATCCCGTACCCC
AGCATTGATGAGGTTGTGGAGAAGGGAGGCCCATACCCTCTGATCATCCTGCCTCAGTTTGGAGGCTACT
GGATTGAGGACCCAGAGAACGTGGGTACTCCAACGTCACTGGGCAGCAGCGTCTATGAGGAGGAGGAAGA
GGACAGCCTGAGCCCCAACACATTCGGCTACAAGCTCGAGTGCAGGGGTGAAGCCAGGGCCTACCGCAGG
CACTTTCTAGGCAAGGATCATCTAAACTTTTACTGTACTGGCAGCAGCCTGGGGAATTTGATCCTGTCCA
TCAAATGCGAGGAAGCTGAGGGCATGGAGTACCTTCGGATCATCCTCAGGTCCAAACTGAAGACGGTGCA
TGAGAGAATCCCCTTGGCTGGATTGAGCAAGTTGCCCAGTGTCCCTCAGATTGCCAAGGCTTTCTGTGAT
GATGCAGTGGGGCTGAAATTCAACCCTGTTTTGTACCCCAAGGCCTCCCAGATGATTGTGTCCTATGATG
AGCATGATGTCAACAATACTTTCAAGTTTGGGGTCATTTATCAAAAAGCCAGGCAGACCCTGGAGGAGGA
GCTATTTGGGAATAATGAGGAGAGCCCAGCTTTCAAGGAGTTTTTGGATCTCCTGGGAGACACCATCACA
CTGCAGGATTTCAAAGGTTTCCGAGGAGGCCTGGATGTGACCCACGGACAGACAGGGGTGGAGTCGGTGT
ACACCACTTTCCGGGACCGGGAGATCATGTTCCATGTGTCTACCAAGCTGCCCTTTACGGATGGTGACAC
CCAGCAGCTGCAGAGAAAGCGGCATATTGGGAATGATATCGTGGCCATCATCTTTCAAGAAGAAAATACA
CCGTTTGTCCCAGATATGATCGCATCAAACTTCTTACATGCCTACATTGTCGTTCAGGCTGATAACCCCG
GCACAGAGACCCCATCCTACAAGGTATCAGTCACTGCTAGGGAAGATGTGCCTGCCTTTGGTCCCCCTCT
GCCAAGCCCGCCTGTTTTCCAGAAGGGCGCAGAATTCCGGGAGTTTCTGCTCACCAAGCTCACGAACGCA
GAGAATGCTTGCTGCAAGTCGGACAAGTTCGCCAAGCTGGAGGACCGGACCCGGGCTGCTCTCCTGGACA
ACCTTCATGATGAACTCCACACACACACTCAGGTCATGCTAGGCATGGGCCCGGAGGAGGACAAGTTCGA
GAATGGGGGCCATGGAGGATTCCTGGAATCTTTTAAGAGGGCCATCCGTGTGCGCAGCCATTCCATGGAG
ACCATGGTGGGTAGCCAGAGGAAGCTGCATGGCGGGAACCTCCCTGGCAGCCTCAGCGGGGGCATTGTCC
ACAACAGCATGGAGGTCACCAAGACCACCTTCTCGCCTCCAGTGGCCGCAGCAACCGCGAAGAACCAGTC
ACGGAGCCCCATCAAGCGGCGGTCGGGACTCTTCCCCCGCCTGCACTCGGGCTCTGAAGGCCAGGGAGAC
AGCCGGACACGATGTGACAGTGCCTCCAGCACCCCCAAAACCCCAGATGGCGGACACTCTTCTCAGGAGA
TAAAGTCTGAGACCTCGTCAAATCCCAGCTCTCCAGAAATTTGTCCCAACAAAGAGAAGCCCTTCATCAA
GTTGAAGGAGAATGGCCGTGCCAACATCTCCCGCTCCTCCTCCAGCACCAGCAGCTTCAGCAGCACAGCA
GGGGAGGGCGAGGCCATGGAGGAGTGTGACAGTGGGAGCAGCCAGCCATCCACAACCTCGCCCTTCAAGC
AGGAGGTGTTTGCCTACAGCCCATCCCCGAGCAGCGAGAGCCCCAGCCTGGGGGCTGCCGCCACGCCCAT
CATCATGAGCCGGAGTCCCACAGATGCCAAAAGCAGAAACTCCCCGAGGTCCAACCTGAAATTCCGCTTT
GATAAACTCAGCCATGCTAGCTCCAGTGCGGGTCACTAA

Translation (712 aa):
MLAGLKVKKQELANSSDVTLPDRPLSPPLTAPPTMKSAEFFEMLEKMQGIKLEEQRPGPQKNKDDYIPYP
SIDEVVEKGGPYPLIILPQFGGYWIEDPENVGTPTSLGSSVYEEEEEDSLSPNTFGYKLECRGEARAYRR
HFLGKDHLNFYCTGSSLGNLILSIKCEEAEGMEYLRIILRSKLKTVHERIPLAGLSKLPSVPQIAKAFCD
DAVGLKFNPVLYPKASQMIVSYDEHDVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTIT
LQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDTQQLQRKRHIGNDIVAIIFQEENT
PFVPDMIASNFLHAYIVVQADNPGTETPSYKVSVTAREDVPAFGPPLPSPPVFQKGAEFREFLLTKLTNA
ENACCKSDKFAKLEDRTRAALLDNLHDELHTHTQVMLGMGPEEDKFENGGHGGFLESFKRAIRVRSHSME
TMVGSQRKLHGGNLPGSLSGGIVHNSMEVTKTTFSPPVAAATAKNQSRSPIKRRSGLFPRLHSGSEGQGD
SRTRCDSASSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFIKLKENGRANISRSSSSTSSFSSTA
GEGEAMEECDSGSSQPSTTSPFKQEVFAYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRF
DKLSHASSSAGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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