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Report for CCDS25089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25089.1 Public Mus musculus 11 Fam222b 23 108 98 CCDS HistoryNCBI Gene:216971Re-query CCDS DB by CCDS ID:25089.1Re-query CCDS DB by GeneID:216971See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073705.11 ENSMUSP00000073384.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073705.11Link to Ensembl Protein Viewer:ENSMUSP00000073384.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073705Re-query CCDS DB by Protein ID:ENSMUSP00000073384
Original member Current member EBI ENSMUST00000155571.1 ENSMUSP00000121832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155571.1Link to Ensembl Protein Viewer:ENSMUSP00000121832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155571Re-query CCDS DB by Protein ID:ENSMUSP00000121832
Original member Current member NCBI NM_001364110.1 NP_001351039.1 Accepted alive Link to Nucleotide Sequence:NM_001364110.1Link to Protein Sequence:NP_001351039.1Re-query CCDS DB by Nucleotide ID:NM_001364110Re-query CCDS DB by Protein ID:NP_001351039Link to BLAST:NP_001351039.1
Original member Current member NCBI NM_145430.3 NP_663405.1 Accepted alive Link to Nucleotide Sequence:NM_145430.3Link to Protein Sequence:NP_663405.1Re-query CCDS DB by Nucleotide ID:NM_145430Re-query CCDS DB by Protein ID:NP_663405Link to BLAST:NP_663405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351039.1 562 Q6P539 562 100% 0 0
NP_663405.1 562 Q6P539 562 100% 0 0

Chromosomal Locations for CCDS 25089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78143133 78143214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78153697 78155303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGCTAGCCTGTCTCCCAGGACCAGGTGACCTGTCCCTTCAGCTTCTTTCTCACACGCAGATGAACACTG
GACTTCAGAAATGGGACACTACACAGAAAATGAGAACTGCTCACTATCCCACCCCAGCCGAATTGGACGC
GTATGCTAAGAAGGTCGCAAACAACCCACTGACTATAAAAATCTTCCCCAACAGTGTGAAGGTTCCCCAG
CGGAAACACGTTCGTCGTACTGTGAACGGCCTCGACACATCAGCCCAGCGCTACAGCCCCTACCCGACTC
AGGCCGCCACCAAGGCAGGCCTGCTTGCCATTGTCAAAGTGCCAGCCAAAAGCATACTCAAGGACTTTGA
CGGCACCCGAGCTCGGTTCCTCCCTGAGGCCATCATGAACCCCCCAGTGGCACCCTATGCTACTGTGGCA
CCCAGCACTTTAGCCCACCCACAGGCCCAGGCTCTGGCCCGCCAGCAGGCTCTGCAGCATGCACAGACCC
TGGCCCATGCCCCTCCCCAGACACTGCAACACCCTCAGGGTATACCACCACCACAGGCACTGTCTCACCC
TCAGAGCCTCCAGCAGCCTCAGGGCCTGGGCCACCCTCAGCAGATGGCCCAAACCCAGGGCTTGGTCCAC
CCTCAGGCCCTGACTCATCAGGGTCTCCAGCACCCCCCTAATCCCTTGCTGCATGGAGGCCGGAAGATGC
CAGACTCAGATGCACCCCCGAATGTGACCGTGTCTACCTCAACTATCCCCCTTTCAATGGCGGCCACCCT
GCAACACAGCCAGCCCCCGGACCTGAGCAGCATTGTGCACCAGATCAACCAGTTTTGCCAGACGAGGGCA
GGCATCAGCACTACCTCAGTGTGTGAGGGCCAGATCGCCAACCCCAGCCCTATTAGTCGCAGTCTGCTCA
TCAATGCAAGCACCCGGGTGTCGACCCACAGCGTCCCCACACCAATGCCTTCATGTGTGGTCAATCCCAT
GGAGCACACCCACGCGGCCACAGCCGCACTGCCTGCTGCAGGTCCTGTCAACCTGCCCACAGGCATCTCT
CGAGCCCCCACTGGCTACCCTAGCGACCTCAAGCCAGTTACCTGGAACCAGCACCAGCTGGCTCACCTAC
AACAGATGTGCAGCGAGGCCGGTGGGACGCCAGCCCCTGGCCTGACAGGCAAACATACAGCAGGACGTGA
GTTGGCAGGGCCTGGTTTTGTGGGCAAGGCCGCTGCCTACCCACAGGAACTCTGCCTGGCACAGTCCTTC
CATCTGAAGCCACCCCTGGAGAAGCCGACCCCATCCCCACCGGTCAACGGCCTACCAGCCCCACTGGCCT
ACCCGAATGGCCACTACTTCCAACCCCTGTGGAACAACATTCTACCAACTCCCAATAGCGACAGCTCGGG
GTCTCAAGACCTAACCATGCCATTCCATGGTGGGCAGCCCACGGGTGCACCCCTCGACTGTGGGGCAGCT
CCTGGGGCCCACTACCGAGCAGGGACTGGGGGTGGTCCAGTGGCAAGCCAGAACAGCTTGATGCAAACGG
TGGATTACCTGAGTGGGGATTTCCAGCAGGCCTGCTTCCGAGAACAGAGCCTGGCCATGTTGAGCAAAGC
CCACCGAGCTCCTGGCACCCGAGCCCCTGATCCCACAGATAGTCGAAGTCTTCATATTCAGCACCCAGGG
TATAGATAG

Translation (562 aa):
MLACLPGPGDLSLQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQ
RKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARFLPEAIMNPPVAPYATVA
PSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQQMAQTQGLVH
PQALTHQGLQHPPNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRA
GISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGIS
RAPTGYPSDLKPVTWNQHQLAHLQQMCSEAGGTPAPGLTGKHTAGRELAGPGFVGKAAAYPQELCLAQSF
HLKPPLEKPTPSPPVNGLPAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLTMPFHGGQPTGAPLDCGAA
PGAHYRAGTGGGPVASQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGTRAPDPTDSRSLHIQHPG
YR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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