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Report for CCDS21099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21099.1 Public Mus musculus 7 Psenen 23 108 98 CCDS HistoryNCBI Gene:66340Re-query CCDS DB by CCDS ID:21099.1Re-query CCDS DB by GeneID:66340See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043898.7 ENSMUSP00000044682.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043898.7Link to Ensembl Protein Viewer:ENSMUSP00000044682.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043898Re-query CCDS DB by Protein ID:ENSMUSP00000044682
Original member Current member EBI ENSMUST00000207747.1 ENSMUSP00000146675.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207747.1Link to Ensembl Protein Viewer:ENSMUSP00000146675.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207747Re-query CCDS DB by Protein ID:ENSMUSP00000146675
Original member Current member NCBI NM_001364016.1 NP_001350945.1 Accepted alive Link to Nucleotide Sequence:NM_001364016.1Link to Protein Sequence:NP_001350945.1Re-query CCDS DB by Nucleotide ID:NM_001364016Re-query CCDS DB by Protein ID:NP_001350945Link to BLAST:NP_001350945.1
Original member Current member NCBI NM_001364017.1 NP_001350946.1 Accepted alive Link to Nucleotide Sequence:NM_001364017.1Link to Protein Sequence:NP_001350946.1Re-query CCDS DB by Nucleotide ID:NM_001364017Re-query CCDS DB by Protein ID:NP_001350946Link to BLAST:NP_001350946.1
Original member Current member NCBI NM_025498.3 NP_079774.1 Accepted alive Link to Nucleotide Sequence:NM_025498.3Link to Protein Sequence:NP_079774.1Re-query CCDS DB by Nucleotide ID:NM_025498Re-query CCDS DB by Protein ID:NP_079774Link to BLAST:NP_079774.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350945.1 101 Q9CQR7 101 100% 0 0
NP_001350946.1 101 Q9CQR7 101 100% 0 0
NP_079774.1 101 Q9CQR7 101 100% 0 0

Chromosomal Locations for CCDS 21099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30561995 30562134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30562324 30562428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30562796 30562856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGAACTTGGAGCGGGTATCCAATGAGGAGAAGTTGAACCTGTGCCGGAAGTACTATCTTGGTGGATTTG
CGTTCCTGCCTTTTCTTTGGTTAGTCAACATTTTCTGGTTCTTCAGAGAGGCGTTCCTCGCCCCAGCCTA
CACAGAGCAGAGCCAAATCAAAGGCTATGTTTGGCGCTCAGCTGTGGGCTTCCTCTTCTGGGTGATCATT
CTCGCCACCTGGATCACCATCTTCCAGATCTACCGGCCCCGCTGGGGCGCTCTTGGGGACTACCTCTCCT
TCACCATTCCCCTGGGCACTCCCTAA

Translation (101 aa):
MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLAPAYTEQSQIKGYVWRSAVGFLFWVII
LATWITIFQIYRPRWGALGDYLSFTIPLGTP


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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