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Report for CCDS90005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90005.1 Public Mus musculus 5 Dnaaf5 23 108 98 CCDS HistoryNCBI Gene:433956Re-query CCDS DB by CCDS ID:90005.1Re-query CCDS DB by GeneID:433956See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196441.1 ENSMUSP00000142924.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196441.1Link to Ensembl Protein Viewer:ENSMUSP00000142924.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196441Re-query CCDS DB by Protein ID:ENSMUSP00000142924
Original member Current member NCBI NM_001363485.1 NP_001350414.1 Accepted alive Link to Nucleotide Sequence:NM_001363485.1Link to Protein Sequence:NP_001350414.1Re-query CCDS DB by Nucleotide ID:NM_001363485Re-query CCDS DB by Protein ID:NP_001350414Link to BLAST:NP_001350414.1

Chromosomal Locations for CCDS 90005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139152951 139152964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139153358 139153476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139161701 139161933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139163199 139163411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139166060 139166203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139170174 139170342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139174126 139174273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139177915 139178065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139181417 139181573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139184528 139184719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139185510 139185646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGCCTGAGATCCGGCAGACAGCCACCAGCCTATGGGAGAAGGTCGGGCTGCAGTGGCAGCAGGAGAACG
AGGCAGATCTAAAGGACAAGCTGGACTTCGCTTCACCTCCTCCTCCCAACTACCCTGAGCACGAGAGCCG
CCCTGGCCTGGGCTGCCGAGAGCTGGTCTTCAGGAACCTCTCCAAGGTGCTTCCTGCCATCTGTCATGAT
ATCACCGACTGGGTGGTGGGGACGCGGGTGAAGGCAGCACAGCTGCTGCCGGTGCTGCTGCTGCACGCAG
AGGACCACATCACCCAGCACCTGGAGATCGTCCTCAGAACCCTGCATCAGGCCTGCACCGATGAAGAGAA
GGCTGTGGTCGGCAGTTGCATAAGAGCCGCAGAGCTCATTGGCACCTTTGTCAGCCCAGAAGTATTTCTG
AAACTGATCTTAGCCATGCTGAAGAAAGCACCCTCTGCCTCTGGCCTCTTGATCCTCGCTTCTGTCATCC
GGGGCTGCCCCCGGAATGCCCTCCAGCCACACGTCACAGTCATAGCCACAGAGCTGGCCCAGGAGCACAT
CTGCCAGGGGTCTGAGAATAATCTCTACCTGGAGCATCTGCTGCTGTGTGTGCAGGCCCTGCTGTCTGTA
TGTCAGGAAGACTGTCGAGCTGCCAGCCTGCAGTTCCTGGAGGTGCTGGTGACAATAATGGCAGTCTCAG
ATGCCGTGGGTCTTGAGAAGAAGGCCCAGAAGACCATGGACACACTGGCTGAGGTGGAGGATATCCCCAG
CAGTCAGGACCTCTACCGCAAGCATGTGGGTGCACTCCTGGAGCGGCTGACAGCCTCGCATGGCGAGTGG
GCAGTGCACTCTGTGCAGTTGCTGAAGTTCACTGTGCTCCTCACCCAGGCAGGCCCGGCTGTGGGAGAAG
CGCTGCAGCATGTGATCCCCACCCTCAGGGCCTGTCTCCAGCCCTCCACAGACCCACACATGCGCCTGAA
GCTCTTCTCTATCCTGTCCATGATGCTGCTGAGGCCTAAGGACACTGTCGATTCTCAGGGACAGTTCCGT
GGCTATTTGGATATGGTAATAAATGACATCCTAGCCCCCAACCTGCAGTGGCATGCAGGGAGGACAGCTG
CAGCCATCCGGACGGCTGCTATATCCTGCCTGTGGGCACTCATCAGCAGTGACATCTTATCGGCCAAGCA
GGTGCAAGAGGCACAAGAGACCCTGATGCCACAAGTGCTGGCTACGCTGGAGGACGACTCCCAGACCACA
CGCCTGATGTCCTGCCGCATCATCAACATGTTCCTCAAGAATTCAGGGGACACCATGGAGCCAGAGAAAT
TCCTCAAGGTCTATCCTGAGCTCTTGAAGCGCCTAGATGATGTCTCCAATGATGTGAGGATGGCAGCTGC
TTCTGCCTTGCTCACCTGGCTCAAGTGCATCGAGAGCTTGGATGGGAAGTCCGCCTATCAGAGCAGCGTT
CAGTTCCTGTACCGGGAGCTGCTGGTCCACCTGGATGACCCAGAGAGTGCCATTCAAGACACCGTCCTAG
AAGTCCTCAAGGAGGGCAGCGTCCTGTTCCCAGATGTGCTGGTGCGGGAGACGGAGGCTGTCGTCCACAA
ACACCGCTCAGCTACCTACTGCGAGCAGCTGCTGCAGCACATGCAGACCATGGCCGCTGCTCGGTGA

Translation (558 aa):
MPEIRQTATSLWEKVGLQWQQENEADLKDKLDFASPPPPNYPEHESRPGLGCRELVFRNLSKVLPAICHD
ITDWVVGTRVKAAQLLPVLLLHAEDHITQHLEIVLRTLHQACTDEEKAVVGSCIRAAELIGTFVSPEVFL
KLILAMLKKAPSASGLLILASVIRGCPRNALQPHVTVIATELAQEHICQGSENNLYLEHLLLCVQALLSV
CQEDCRAASLQFLEVLVTIMAVSDAVGLEKKAQKTMDTLAEVEDIPSSQDLYRKHVGALLERLTASHGEW
AVHSVQLLKFTVLLTQAGPAVGEALQHVIPTLRACLQPSTDPHMRLKLFSILSMMLLRPKDTVDSQGQFR
GYLDMVINDILAPNLQWHAGRTAAAIRTAAISCLWALISSDILSAKQVQEAQETLMPQVLATLEDDSQTT
RLMSCRIINMFLKNSGDTMEPEKFLKVYPELLKRLDDVSNDVRMAAASALLTWLKCIESLDGKSAYQSSV
QFLYRELLVHLDDPESAIQDTVLEVLKEGSVLFPDVLVRETEAVVHKHRSATYCEQLLQHMQTMAAAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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