NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS87587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87587.1 Public Homo sapiens 8 BIN3 24 110 108 CCDS HistoryNCBI Gene:55909Re-query CCDS DB by CCDS ID:87587.1Re-query CCDS DB by GeneID:55909See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399977.8 ENSP00000382859.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399977.8Link to Ensembl Protein Viewer:ENSP00000382859.4Re-query CCDS DB by Nucleotide ID:ENST00000399977Re-query CCDS DB by Protein ID:ENSP00000382859
Original member Current member NCBI NM_001363046.2 NP_001349975.1 Accepted alive Link to Nucleotide Sequence:NM_001363046.2Link to Protein Sequence:NP_001349975.1Re-query CCDS DB by Nucleotide ID:NM_001363046Re-query CCDS DB by Protein ID:NP_001349975Link to BLAST:NP_001349975.1

Chromosomal Locations for CCDS 87587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22621422 22621568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22623915 22624049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22624222 22624363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22629964 22630004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22630442 22630578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22636922 22636937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGAAAACTTCAGCACCATGTCAAAATCTGCCGTGAAGATATCCTTGGACTTACTCTCCAATCCCCTCT
GTGAGCAAGACCAGGACCTTCTGAACATGGTGACGGCCCTGGACACGGCCATGAAGCGGATGGATGCCTT
CAATCAGGAAAAGGTGAACCAGATCCAGAAGACTGTGATCGAGCCCTTAAAAAAGTTCGGCAGTGTCTTC
CCGAGCCTCAACATGGCTGTGAAGAGGCGGGAACAGGCCTTGCAGGACTACAGGAGGCTGCAGGCCAAGG
TGGAGAAGTATGAGGAAAAGGAGAAGACGGGGCCAGTGCTGGCCAAGCTCCACCAGGCACGAGAGGAGCT
GCGGCCTGTGCGGGAGGACTTTGAAGCCAAGAACAGGCAGCTGCTGGAGGAGATGCCGCGCTTCTACGGC
AGCCGCCTCGACTACTTCCAGCCCAGCTTTGAGTCCCTCATCCGAGCTCAGGTTGTGTACTACTCGGAAA
TGCACAAGATCTTTGGAGACCTGTCCCATCAGCTTGACCAGCCAGGCCACTCCGATGAGCAGCGGGAGCG
GGAGAACGAGGCCAAACTCAGTGAGCTCCGGGCCCTCTCCATTGTGGCCGATGACTGA

Translation (205 aa):
MENFSTMSKSAVKISLDLLSNPLCEQDQDLLNMVTALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSVF
PSLNMAVKRREQALQDYRRLQAKVEKYEEKEKTGPVLAKLHQAREELRPVREDFEAKNRQLLEEMPRFYG
SRLDYFQPSFESLIRAQVVYYSEMHKIFGDLSHQLDQPGHSDEQRERENEAKLSELRALSIVADD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH