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Report for CCDS24601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24601.1 Public Mus musculus 11 Zfp62 23 108 98 CCDS HistoryNCBI Gene:22720Re-query CCDS DB by CCDS ID:24601.1Re-query CCDS DB by GeneID:22720See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061757.3 ENSMUSP00000056226.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061757.3Link to Ensembl Protein Viewer:ENSMUSP00000056226.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061757Re-query CCDS DB by Protein ID:ENSMUSP00000056226
Original member Current member EBI ENSMUST00000109197.7 ENSMUSP00000104820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109197.7Link to Ensembl Protein Viewer:ENSMUSP00000104820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109197Re-query CCDS DB by Protein ID:ENSMUSP00000104820
Original member Current member EBI ENSMUST00000109198.7 ENSMUSP00000104821.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109198.7Link to Ensembl Protein Viewer:ENSMUSP00000104821.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109198Re-query CCDS DB by Protein ID:ENSMUSP00000104821
Original member Current member EBI ENSMUST00000180016.1 ENSMUSP00000137583.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180016.1Link to Ensembl Protein Viewer:ENSMUSP00000137583.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180016Re-query CCDS DB by Protein ID:ENSMUSP00000137583
Original member Current member NCBI NM_001024846.2 NP_001020017.1 Accepted alive Link to Nucleotide Sequence:NM_001024846.2Link to Protein Sequence:NP_001020017.1Re-query CCDS DB by Nucleotide ID:NM_001024846Re-query CCDS DB by Protein ID:NP_001020017Link to BLAST:NP_001020017.1
Original member Current member NCBI NM_001362728.1 NP_001349657.1 Accepted alive Link to Nucleotide Sequence:NM_001362728.1Link to Protein Sequence:NP_001349657.1Re-query CCDS DB by Nucleotide ID:NM_001362728Re-query CCDS DB by Protein ID:NP_001349657Link to BLAST:NP_001349657.1
Original member Current member NCBI NM_001362729.1 NP_001349658.1 Accepted alive Link to Nucleotide Sequence:NM_001362729.1Link to Protein Sequence:NP_001349658.1Re-query CCDS DB by Nucleotide ID:NM_001362729Re-query CCDS DB by Protein ID:NP_001349658Link to BLAST:NP_001349658.1
Original member Current member NCBI NM_001362730.1 NP_001349659.1 Accepted alive Link to Nucleotide Sequence:NM_001362730.1Link to Protein Sequence:NP_001349659.1Re-query CCDS DB by Nucleotide ID:NM_001362730Re-query CCDS DB by Protein ID:NP_001349659Link to BLAST:NP_001349659.1
Original member Current member NCBI NM_001362731.1 NP_001349660.1 Accepted alive Link to Nucleotide Sequence:NM_001362731.1Link to Protein Sequence:NP_001349660.1Re-query CCDS DB by Nucleotide ID:NM_001362731Re-query CCDS DB by Protein ID:NP_001349660Link to BLAST:NP_001349660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020017.1 907 Q8C827-2 907 100% 0 0
NP_001349657.1 907 Q8C827-2 907 100% 0 0
NP_001349658.1 907 Q8C827-2 907 100% 0 0
NP_001349659.1 907 Q8C827-2 907 100% 0 0
NP_001349660.1 907 Q8C827-2 907 100% 0 0

Chromosomal Locations for CCDS 24601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49215084 49217807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2724 nt):
ATGGAGGATGAGGAGTCGTCTAAAAAGAATGAAAATGATTCAAATGCAGACTCTCAGTGCCCAAGTGTGG
GATTTTTTCATAAGGATCATATGCAGAAATCTAAGACCGGTGACACTTGTGACTTGTTTCCTAAATGGAA
AATACTGAAGGAAGGCAAAAGTAGTATCAGAGAAATGATTGACACACATACAAACGCAGCAAATATAAAA
CTAGAGCAGGATGATGAGACATCTGAGAAAAGTTTCTACCCAAGTACAAATACAATGCACCAGACTATCC
CCACAGAACCAAATTGTACTAAACAAGGTGAGCACACAGAGAACATTAATGGAAACGTACACCCTGCTCA
TATTGCTGATAAGAAATTACATAAGTGTGATGAGTGTGGAAAATCCTTCAAATACAATTCTCGTCTTGTT
CAACATAAAATTATGCACACTGGAGAAAAGCGCTACGAGTGTGATGACTGTAGGGGGACTTTTCGGAGTA
GCTCCAGTCTTCGAGTCCACAAGCGCATCCATACTGGGGAAAAGCCCTATAAGTGTGATGAGTGTGGCAA
AGCCTACATGTCCTACTCTAGCCTTATAAACCACAAAAGCACTCATTCTGGGGAGAAGAACTGCAAATGT
GACGAATGTGGAAAATCCTTCAATTATAGTTCTGTTCTGGACCAGCATAAAAGGATCCACACCGGAGAGA
AGCCCTATGAATGTGGTGAGTGTGGAAAGGCCTTCAGAAACAGTTCTGGTTTGAGAGTCCACAAAAGGAT
CCACACAGGGGAGAAGCCCTATGAATGTGATACCTGTGGGAAAACCTTCAGTAATAGTTCTGGCCTGAGG
GTCCACAAAAGGATCCATACAGGTGAGAAACCCTATGAATGTGATGAATGTGGGAAGGCATTCATTACTT
GCAGAACACTTCTAAATCATAAAAGCATCCACTTTGGTGATAAACCTTATAAATGTGATGAGTGTGAAAA
ATCTTTTAATTACAGCTCTCTCCTCATTCAGCATAAAGTCATCCACACTGGTGAGAAACCTTATGAATGT
GATGAATGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTTATAGTGCATAAAAGGATCCACACAGGAGAGA
AACCTTACAAGTGTGATATCTGTGGCAAAGCATTCAGCTATAGTTCAGGCCTTGCAGTCCATAAAAGCAT
TCATCCTGGAAAGAAAGCCCATGAATGTAAAGACTGTGGCAAGTCCTTTAGTTATAACTCACTTCTTCTT
CAGCATAAGACCATTCATACTGGAGAAAGACCTTATGTATGTGATGTGTGTGGCAAAACGTTCAGGAACA
ATTCAGGTCTCAAAGTTCATCGGAGACTCCATACTGGGGAAAAACCATATAAGTGTGATGTATGTGGGAA
GGCCTATATCTCACGCTCAAGCCTTAAAAATCACAAAGGAATCCACATGGGGGAGAAGCCCTATAAATGC
AGCTATTGTGAGAAATCTTTCAACTACAGTTCTGCCCTTGAACAACATAAAAGGATTCATACAAGGGAGA
AGCCCTTTGGGTGTGATGAGTGTGGAAAAGCCTTCAGAAACAATTCAGGCCTTAAAGTACATAAGCGAAT
TCACACAGGGGAGAGACCTTACAAATGTGAAGAATGTGGAAAAGCCTACATCTCACTCTCAAGCCTTATA
AATCATAAAAGTGTACACCCTGGGGAAAAGCCCTTTAAGTGTGATGAGTGTGAGAAAGCCTTCATCACAT
ACAGAACACTTCTAAACCACAAAAAAATTCATCTTGGAGAAAAGCCCTATAAATGCGATGTGTGTGAGAA
ATCTTTTAACTACACCTCACTCCTTTCTCAACACAAAAGAGTTCATACTAGAGAGAAACCCTTTGAATGT
GACAGGTGTGAGAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTGCATAAAAGAATACACACTGGGGAGA
AGCCCTATGAGTGTGACATATGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCATAAAAGTAC
ACACCCTGGCAAGACGTCCTATACATGTGATGAATGCGGAAAAGCATTTTTCTCAAGCAGAACTCTTATA
AGCCATAAGAGAGTCCATCTTGGGGAAAAGCCCTTCAAGTGTGTTGAGTGTGGGAAGTCGTTCAGCTACA
GCTCACTTCTTTCCCAACACAAGAGGATCCACACAGGGGAGAAACCTTATGTATGTGATTGGTGTGGGAA
GGCATTCAGGAACAGCTCAGGCCTCACAGTACATAAAAGGATCCACACAGGAGAGAAACCCTATGGGTGT
GATGAATGTGAAAAGGCATACATTTCACACTCAAGTCTTATTAATCATAAAAGTGTCCACCGTGGAAAGC
AGCCCTATAATTGTGAGTGTGGGAAATCTTTCAATTACAGATCTGTCCTTGACCAACATAAAAGAATCCA
CACTGGAAAAAAGCCATATCGATGTAATGATTGTGGGAAGGCATTTAATATCAGGTCAAACCTTACCAAG
CACAAAAGAATCCATACAGGAGAGGAATCTTTAAATATGGCAAATATGGAAAGTCATAGTGGCACATTCC
AGAAGATGATCTACTATGAGGGAGGGAATTCTCTGGATGGGACCAGAATGCAGATGCCTGTGTGGGAGGC
AGAGCATGCCAAGTCTCAAAGAAATCAAATAGAAGAAAAACTTTATGAATATAACAATTTCTGA

Translation (907 aa):
MEDEESSKKNENDSNADSQCPSVGFFHKDHMQKSKTGDTCDLFPKWKILKEGKSSIREMIDTHTNAANIK
LEQDDETSEKSFYPSTNTMHQTIPTEPNCTKQGEHTENINGNVHPAHIADKKLHKCDECGKSFKYNSRLV
QHKIMHTGEKRYECDDCRGTFRSSSSLRVHKRIHTGEKPYKCDECGKAYMSYSSLINHKSTHSGEKNCKC
DECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDTCGKTFSNSSGLR
VHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYEC
DECGKAFRNSSGLIVHKRIHTGEKPYKCDICGKAFSYSSGLAVHKSIHPGKKAHECKDCGKSFSYNSLLL
QHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHMGEKPYKC
SYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLI
NHKSVHPGEKPFKCDECEKAFITYRTLLNHKKIHLGEKPYKCDVCEKSFNYTSLLSQHKRVHTREKPFEC
DRCEKVFRNNSSLKVHKRIHTGEKPYECDICGKAYISHSSLINHKSTHPGKTSYTCDECGKAFFSSRTLI
SHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDWCGKAFRNSSGLTVHKRIHTGEKPYGC
DECEKAYISHSSLINHKSVHRGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNDCGKAFNIRSNLTK
HKRIHTGEESLNMANMESHSGTFQKMIYYEGGNSLDGTRMQMPVWEAEHAKSQRNQIEEKLYEYNNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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