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Report for CCDS16094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16094.1 Public Mus musculus 2 Bbs5 23 108 98 CCDS HistoryNCBI Gene:72569Re-query CCDS DB by CCDS ID:16094.1Re-query CCDS DB by GeneID:72569See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074963.8 ENSMUSP00000074494.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074963.8Link to Ensembl Protein Viewer:ENSMUSP00000074494.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074963Re-query CCDS DB by Protein ID:ENSMUSP00000074494
Original member Current member NCBI NM_028284.3 NP_082560.1 Accepted alive Link to Nucleotide Sequence:NM_028284.3Link to Protein Sequence:NP_082560.1Re-query CCDS DB by Nucleotide ID:NM_028284Re-query CCDS DB by Protein ID:NP_082560Link to BLAST:NP_082560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082560.1 341 Q9CZQ9 341 100% 0 0

Chromosomal Locations for CCDS 16094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 69647284 69647342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69649022 69649104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69652782 69652847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69654063 69654112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69654246 69654373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69655499 69655634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69656897 69656992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69661036 69661098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69663026 69663160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69665026 69665109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69666941 69666964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69667104 69667205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGTCTGTGCTGGACGTGTTGTGGGAGGACCGCGACGTGCGCTTCGACGTGTCCTCGCAACAGATGAAAA
CAAGACCCGGGGAAGTCCTCATTGACTGTTTAGATTCCATTGAAGACACAAAAGGAAACAATGGAGACAG
AGGTAGACTCTTAGTCACAAACTTAAGGATCATCTGGCATTCCTTGGCATTGCCCAGAGTCAATCTTTCT
ATTGGTTACAACTGCATATTGAATATCACAACAAGAACTGCTAACTCTAAACTGCGAGGCCAAACCGAAG
CTCTTTATATATTGACAAAATGCAACACTACCCGGTTTGAGTTTATATTCACAAACCTGGTTCCCGGGAG
CCCCAGACTTTTTACTTCTGTGATCGCAGTGCACAGAGCATATGAAACTTCTAAAATGTACCGTGACTTT
AAGTTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAGGTTACTACCACAGGAGCATGTGTATGATAAGA
TCAATGGCGTATGGAATCTGTCCAGCGACCAGGGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAAT
TGTGTGGCATGCCAATATGAATGACAGTTTTAATGTCAGCATACCATATCTGCAAATTCGTTCAATAAAG
ATCAGAGATTCAAAATTTGGTTTGGCGCTTGTCATAGAAAGCTCTCAGCAGAGTGGAGGATACGTCCTTG
GCTTTAAAATAGACCCTGTGGAAAAACTACAGGAATCAGTTAAAGAGATCAACTCACTTCACAAAGTCTA
TTCTGCCAGTCCAATATTTGGAGTGAATTATGAAATGGAAGAAAAGCCACAGCCACTTGAAGCTCTGACT
GTTGAACAAATTCAAGATGATGTGGAAATAGACTCTGATGACCACACGGATGCTTTTGTGGCGTATTTTG
CTGATGGGAATAAGCAACAAGATCGTGAACCTGTATTTTCAGAAGAACTGGGGCTTGCAATAGAGAAACT
GAAGGATGGATTCACACTGCAGGGACTTTGGGAAGTGATGAGTTGA

Translation (341 aa):
MSVLDVLWEDRDVRFDVSSQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRIIWHSLALPRVNLS
IGYNCILNITTRTANSKLRGQTEALYILTKCNTTRFEFIFTNLVPGSPRLFTSVIAVHRAYETSKMYRDF
KLRSAVIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTFFITNVRIVWHANMNDSFNVSIPYLQIRSIK
IRDSKFGLALVIESSQQSGGYVLGFKIDPVEKLQESVKEINSLHKVYSASPIFGVNYEMEEKPQPLEALT
VEQIQDDVEIDSDDHTDAFVAYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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