NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25628.1 Public Mus musculus 11 Otop2 23 108 98 CCDS HistoryNCBI Gene:237987Re-query CCDS DB by CCDS ID:25628.1Re-query CCDS DB by GeneID:237987See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055490.8 ENSMUSP00000062109.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055490.8Link to Ensembl Protein Viewer:ENSMUSP00000062109.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000055490Re-query CCDS DB by Protein ID:ENSMUSP00000062109
Original member Current member EBI ENSMUST00000106544.1 ENSMUSP00000102154.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106544.1Link to Ensembl Protein Viewer:ENSMUSP00000102154.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106544Re-query CCDS DB by Protein ID:ENSMUSP00000102154
Original member Current member NCBI NM_001362400.1 NP_001349329.1 Accepted alive Link to Nucleotide Sequence:NM_001362400.1Link to Protein Sequence:NP_001349329.1Re-query CCDS DB by Nucleotide ID:NM_001362400Re-query CCDS DB by Protein ID:NP_001349329Link to BLAST:NP_001349329.1
Original member Current member NCBI NM_172801.2 NP_766389.2 Accepted alive Link to Nucleotide Sequence:NM_172801.2Link to Protein Sequence:NP_766389.2Re-query CCDS DB by Nucleotide ID:NM_172801Re-query CCDS DB by Protein ID:NP_766389Link to BLAST:NP_766389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349329.1 563 Q80SX5 563 100% 0 0
NP_766389.2 563 Q80SX5 563 100% 0 0

Chromosomal Locations for CCDS 25628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115323419 115323731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115324568 115324704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115326421 115326479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115326849 115326982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115328979 115329856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115331815 115331985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGTCGGAGGAACTGGTCCCGCATCCCAATGAGAGCCTGCCGGGGCCTCGGGCCAGCCCCCGTGAGGTGT
GGAAAAAGGGCGGCCGCCTGCTGTCGGTGCTGTTGGCTGTCAACGTGCTGCTGCTCGCCTGCACGCTCAT
CAGCGGCGGTGCCTTCAACAAGGTGGCGGTGTATGACACGGACGTGTTCGCTCTGCTCACCACCATGATG
CTGCTGGCCGCGCTATGGATAGTCTTCTACCTCCTCCGCACCGCTCGCTGTCCAGACGCGGTGCCTTACC
GGGATGCTCATGCTGGTCCCATCTGGCTCCGAGGTGGGCTGGTGCTGTTTGGAATCTGCACCCTTGTCAT
GGATGTCTTCAAGACTGGCTACTATTCCAGTTTCTTTGAGTGCCAGTCGGCCATCAAGATCCTGCACCCC
ATCATCCAAGCCGTGTTTGTCATTGTCCAGACTTACTTTCTCTGGATCTCCGCTAAAGACTGTATCCATA
CCCACCTGGACCTGACCCGGTGTGGGCTCATGTTCACCCTCGCCACCAACCTCGCCATCTGGATGGCAGC
CGTAGTGGATGAGTCCGTGCACCAGGCCCACTCCTACAGTGGTTCCCATGGCAACACCAGCCACACCCGC
CTCAACCCTGACTCAAAGCGTGCAGGAGGTGCAGCTGAAGAAGACCCGTGCCTCTGCAGCACAGCCATCT
GTCAGATCTTCCAGCAAGGCTATTTCTACCTGTATCCCTTCAACATCGAGTACAGCCTCTTTGCTTCCAC
CATGCTGTATGTCATGTGGAAGAATGTGGGAAGGCTGCTCGCCTCCACCCACGGCCACGGCCACACACCG
TCCAGGGTCAGCCTGTTCCGGGAGACCTTCTTTGCCGGCCCAGTCTTGGGCCTGCTCCTCTTTGTGGTGG
GGTTGGCTGTCTTCATCCTTTATGAGGTCCAGGTGAGTGGAGAGAGAGGCCACACCCGACAGGCCCTGGT
CATCTACTACAGCTTTAACATTGTCTGTCTGGGGCTCATGACTCTGGTCAGCCTGAGTGGTTCAGTCATC
TATCGTTTTGACCGTCGGGCCATGGACCATCATAAGAACCCGACACGGACCCTGGATGTGGCCCTGCTAA
TGGGCGCCGCCCTGGGCCAATACGCTATCTCCTACTACTCTATCGTGGCTGTGGTGGTGGGCTCTCCCAG
AGACCTGCAGGGGGCGCTCAACCTGTCCCACGCTCTACTCATGATCGCTCAGCACACCTTCCAGAATGTC
TTCATCATTGAGAGCCTCCATCGGGGACCTCCTGGGGCTGAGCCTCGTGAAATGCCCCCCAAGGAGCCCT
GCCAAGGCATCACCTTTGCTAACCTGGATGCTATCCGCACCTTGCCTTCCTGTCCACCCACCCCCAGGCT
GGTCATTCCCAACCTAGAAAGTCCTCAGGAAGCAGTGGCTATCATCTCGGCCCCCAGGTGCCACTGGCGA
CGTCGGTGCCTGAAAGACATCTCTCTGTTTCTCCTGCTCTGTAACGTCATCCTGTGGATCATGCCTGCCT
TTGGCGCTCGCCCGCACTTCAGCAATACCGTGGAGGTGGACTTTTACGGTTACTCCCTCTGGGCGGCCAT
CGTCAACATCTGCCTACCTTTTGGCATCTTCTACCGAATGCACGCTGTCTCCAGTCTACTGGAGGTCTAT
GTACTGTCCTGA

Translation (563 aa):
MSEELVPHPNESLPGPRASPREVWKKGGRLLSVLLAVNVLLLACTLISGGAFNKVAVYDTDVFALLTTMM
LLAALWIVFYLLRTARCPDAVPYRDAHAGPIWLRGGLVLFGICTLVMDVFKTGYYSSFFECQSAIKILHP
IIQAVFVIVQTYFLWISAKDCIHTHLDLTRCGLMFTLATNLAIWMAAVVDESVHQAHSYSGSHGNTSHTR
LNPDSKRAGGAAEEDPCLCSTAICQIFQQGYFYLYPFNIEYSLFASTMLYVMWKNVGRLLASTHGHGHTP
SRVSLFRETFFAGPVLGLLLFVVGLAVFILYEVQVSGERGHTRQALVIYYSFNIVCLGLMTLVSLSGSVI
YRFDRRAMDHHKNPTRTLDVALLMGAALGQYAISYYSIVAVVVGSPRDLQGALNLSHALLMIAQHTFQNV
FIIESLHRGPPGAEPREMPPKEPCQGITFANLDAIRTLPSCPPTPRLVIPNLESPQEAVAIISAPRCHWR
RRCLKDISLFLLLCNVILWIMPAFGARPHFSNTVEVDFYGYSLWAAIVNICLPFGIFYRMHAVSSLLEVY
VLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH