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Report for CCDS88250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88250.1 Public Mus musculus 11 Msl1 23 108 98 CCDS HistoryNCBI Gene:74026Re-query CCDS DB by CCDS ID:88250.1Re-query CCDS DB by GeneID:74026See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037930.12 ENSMUSP00000043328.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037930.12Link to Ensembl Protein Viewer:ENSMUSP00000043328.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037930Re-query CCDS DB by Protein ID:ENSMUSP00000043328
Original member Current member NCBI NM_001361933.1 NP_001348862.1 Accepted alive Link to Nucleotide Sequence:NM_001361933.1Link to Protein Sequence:NP_001348862.1Re-query CCDS DB by Nucleotide ID:NM_001361933Re-query CCDS DB by Protein ID:NP_001348862Link to BLAST:NP_001348862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348862.1 370 Q6PDM1-3 370 100% 0 0

Chromosomal Locations for CCDS 88250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98798669 98798752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98799140 98799363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98800000 98800382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98802782 98802846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98803903 98803970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98804302 98804426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98804847 98804919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98805342 98805432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGCTTAGAGTGTTTGCCAGGCACGGTCAGGAGGCCCTGATTCCATCCCTAGCAGCACAGACGACGACCA
CGAACAGAAACAAGCTCCTTGCTCGGATTGAACGTATGGAAAGGCGGATGCAGCTGGTGAAGAGGGATAA
CGAGAAGGAAAGGCACAAGCTGCTCCAGGGCTATGAACCTGAAGAGAGAGAGGAAGCAGAGTTGTCTGAG
AAAATTAAATTGGAGCGCCAGCCGGAGCTTTGCGAGACCTCCCAGGCTCTGCCTTCCAAGCCTTTCTCAT
GTGGCCGGAGTGGAAAGGGACACAAAAGGAAAACCCCATTTGGAAATACAGAAAGAAAGACTCCTGTTAA
AAAGCTGGCTCCTGAATTTTCAAAAGTCAAAACAAAAACTCCTAAGCACTCTCCCATTAAAGAGGAACCC
TGTGGTTCCATATCAGAAACTGTTTGTAAACGTGAATTGAGGAGCCAAGAAACCCCAGAAAAGCCCCGGT
CTTCAGTGGATACCCCACCAAGACTCTCGACTCCCCAAAAGGGACCCAGCACCCACCCCAAGGAGAAAGC
CTTCTCAAGTGAGATGGAAGATTTGCCGTACCTTTCCACCACAGAAATGTATTTGTGTCGTTGGCACCAG
CCTCCCCCATCACCGTTACCATTACGGGAATCCTCTCCAAAGAAGGAGGAGACTGTAGCAATTCCTTCTT
GGAGGGACCACTCAGTAGAGCCTCTAAGGGACCCAAATCCTTCAGACATTTTGGAGAACCTGGATGACAG
TGTATTTTCAAAGAGGCATGCAAAACTGGAGCTAGACGAGAAGAGGAGAAAACGATGGGATATTCAGAGG
ATCAGGGAACAAAGAATTTTACAGCGACTGCAGCTCAGAATGTATAAAAAGAAAGGAATTCAGGAATCTG
AGCCTGAGGTTACCTCATTTTTCCCTGAGCCAGATGATGTTGAAAGTTTGCTGATTACCCCCTTCTTGCC
TGTTGTAGCATTTGGACGGCCATTGCCAAAATTAGCTCCACAGAACTTTGAACTACCCTGGTTGGATGAG
CGAAGCCGTTGCAGGTTGGAGATCCAGAAGAAGCACACACCTCACCGGACCTGTAGGAAGTAG

Translation (370 aa):
MLRVFARHGQEALIPSLAAQTTTTNRNKLLARIERMERRMQLVKRDNEKERHKLLQGYEPEEREEAELSE
KIKLERQPELCETSQALPSKPFSCGRSGKGHKRKTPFGNTERKTPVKKLAPEFSKVKTKTPKHSPIKEEP
CGSISETVCKRELRSQETPEKPRSSVDTPPRLSTPQKGPSTHPKEKAFSSEMEDLPYLSTTEMYLCRWHQ
PPPSPLPLRESSPKKEETVAIPSWRDHSVEPLRDPNPSDILENLDDSVFSKRHAKLELDEKRRKRWDIQR
IREQRILQRLQLRMYKKKGIQESEPEVTSFFPEPDDVESLLITPFLPVVAFGRPLPKLAPQNFELPWLDE
RSRCRLEIQKKHTPHRTCRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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