NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89318.1 Public Mus musculus 19 Scyl1 23 108 98 CCDS HistoryNCBI Gene:78891Re-query CCDS DB by CCDS ID:89318.1Re-query CCDS DB by GeneID:78891See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025890.9 ENSMUSP00000025890.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025890.9Link to Ensembl Protein Viewer:ENSMUSP00000025890.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000025890Re-query CCDS DB by Protein ID:ENSMUSP00000025890
Original member Current member NCBI NM_001361921.1 NP_001348850.1 Accepted alive Link to Nucleotide Sequence:NM_001361921.1Link to Protein Sequence:NP_001348850.1Re-query CCDS DB by Nucleotide ID:NM_001361921Re-query CCDS DB by Protein ID:NP_001348850Link to BLAST:NP_001348850.1

Chromosomal Locations for CCDS 89318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5758572 5758696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5758800 5758860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5758940 5759146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5759271 5759342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5759665 5759753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5759981 5760145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5760533 5760608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5760713 5760901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5761653 5761808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5764669 5764782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5765310 5765417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5766158 5766316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5769469 5769624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5769721 5769811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5770203 5770552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5770723 5770863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5771220 5771330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGTGGTTCTTTGCCCGGGACCCGGTCCGGGACTTCCCGTTCGAGCTGAGCCCTGAGCCCCCCGAAGGCG
GGCCGCCCGGGCCCTGGATCCTGCACCGAGGCCGCAAAAAGGCCACAGGCAGCGCAGTGTCCATCTTCGT
GTATGATGTGAAACCGGGAGCTGAAGAGCAGACCCAGGTGGCCAAAGCTGCCTTCAAACGCCTCAAAACT
CTCCGACACCCCAACATCCTGGCCTATATCGATGGGTTGGAGACAGAAAAGTGCCTCCACATCGTGACAG
AGGCTGTGACCCCCCTGGGAACATACCTCAAGGCACGAGCAGAAGCAGGTGGCCTGAAGGAGCAGGAGCT
GTCATGGGGGTTACACCAGATCGTGAAAGCCCTCAGCTTCCTGGTCAACGACTGCAACCTCATCCACAAT
AATGTCTGCATGGCCGCTGTGTTTGTGGACAGGGCTGGCGAGTGGAAACTTGGGGGTCTGGACTACATGT
ACTCGGCACAGGGCAACGGCGGGGGACCACCCAGCAAGGGGATCCCGGAGCTCGAGCAGTATGATCCCCC
GGAGCTGGCTGACAGCAGTAGCAGAGCAGTCAGAGAGAAGTGGTCAGCAGACATGTGGCGCTTGGGCTGC
CTCATCTGGGAAGTTTTCAATGGGTCTCTACCTCGGGCAGCTGCCCTGCGCAACCCTGGGAAGATCCCCA
AATCCCTGGTGACCCATTACTGTGAACTGGTGGGAGCTAACCCAAAAGTACGTCCCAACCCGGCCCGCTT
CCTGCAGAACTGCCGGGCACCCGGTGGCTTCATGAGCAACCGCTTTGTTGAGACCAACCTCTTCCTGGAG
GAGATTCAGATCAAAGAGCCAGCTGAGAAGCAGAAGTTCTTCCAAGAGCTGAGCAAGAGTCTAGACTCAT
TTCCCGAAGATTTCTGTCGACACAAGGTGCTGCCCCAGCTACTGACTGCCTTTGAGTTTGGCAATGCTGG
GGCCGTGGTCCTCACACCTCTCTTCAAGGTGGGAAAATCCCTCCGTGCTGAAGAGTACCAGGAGAAGATC
ATCCCCGTGGTAGTTAAGATGTTCTCATCCACCGACCGGGCCATGCGCATCCGCCTCCTCCAGCAGATGG
AGCAGTTCATCCAATACCTTGATGAGCCAACAGTCAACACGCAGATTTTCCCCCACGTCACACATGGCTT
CCTGGACACCAACCCCGCCATCCGCGAGCAGACGGTCAAGTCCATGCTGCTCTTGGCCCCAAAGCTGAAT
GAGGCCAATCTCAATGTGGAACTGATGAAGCACTTTGCAAGGCTACAAGCCAAGGACGACCAGGGTCCTA
TCCGCTGCAACACCACGGTCTGCTTGGGCAAAATCGGCTCCTATCTCAGTGCTAGTACTAGACACAGGGT
CCTCACCTCCGCCTTCAGCAGAGCCACTAAGGACCCATTTGCACCATCCCGGGTTGCGGGTGTCCTGGGC
TTTGCTGCCACACACAATCTCTATTCGATGGACGACTGTGCCCATAAGATCCTGCCTGTGCTCTGTGGCC
TTACTGTGGACCCTGAGAAATCTGTGCGGGACCAGGCCTTTAAGACCATTCGAAGCTTCCTGTCCAAATT
AGAGTCTGTGTCAGAGGATCCCACCCAGCTGGCAGAAGTAGAGAAGGATGTCCATGCAGCGTCCAGTCCT
GGAACAGGAGGAGCTGCAGCCAGCTGGGCAGGCTGGGCTGTGACTGGGGTATCCTCTCTCACCTCCAAGC
TGATCCGAGCACACCCCACGCCTGTGCCGTCTGATACCACTGTGCCCCAGAGACCAGTGCCAGAGGGGCA
CTGGGAGACACAGGAAGACAAGGACACTGCAGAAGACAGCGCCACTGCTGACAGATGGGACGATGAGGAC
TGGGGCAGCTTGGAGCAGGAAGCTGAATCCGTGTTGGCACAGCAGGATGACTGGAGTGCCAAGGGCCAAG
GAAGCCGAGCTGGACAGATCAACCACCCAGACCACAAATCTCTGGAATCACATTGGAGCAGCTGGGAAGT
TGAGGGCTCCTGGGACCAGGGCTGGCAGGAACCCAGCTCTGTGGAGCCACCTCCAGAAGGCACTCGGCTA
GCTAGCGAATATAACTGGGGTGGTGCAGAGCCCAGTGACAAGGGCGACCCCTTTGCTGCCCTGTCTGTTC
GTCCCAGCGCTCAGCCCAGGCCAGACCCAGACTCCTGGGGTGAAGACAACTGGGAAGGCTTGGAGGCTGA
GAGCAGACAGGTAAAGGCAGAGCTGGCCCGGAAAAAGCGAGAGGAAAGGAGAAGAGAAATGGAAGCCAAA
CGGGCAGAGAAAAAGACCACCAAGGGGCCCATGAAGCTGGGAGCCCGGAAGCTGGACTGA

Translation (789 aa):
MWFFARDPVRDFPFELSPEPPEGGPPGPWILHRGRKKATGSAVSIFVYDVKPGAEEQTQVAKAAFKRLKT
LRHPNILAYIDGLETEKCLHIVTEAVTPLGTYLKARAEAGGLKEQELSWGLHQIVKALSFLVNDCNLIHN
NVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPSKGIPELEQYDPPELADSSSRAVREKWSADMWRLGC
LIWEVFNGSLPRAAALRNPGKIPKSLVTHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLE
EIQIKEPAEKQKFFQELSKSLDSFPEDFCRHKVLPQLLTAFEFGNAGAVVLTPLFKVGKSLRAEEYQEKI
IPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVTHGFLDTNPAIREQTVKSMLLLAPKLN
EANLNVELMKHFARLQAKDDQGPIRCNTTVCLGKIGSYLSASTRHRVLTSAFSRATKDPFAPSRVAGVLG
FAATHNLYSMDDCAHKILPVLCGLTVDPEKSVRDQAFKTIRSFLSKLESVSEDPTQLAEVEKDVHAASSP
GTGGAAASWAGWAVTGVSSLTSKLIRAHPTPVPSDTTVPQRPVPEGHWETQEDKDTAEDSATADRWDDED
WGSLEQEAESVLAQQDDWSAKGQGSRAGQINHPDHKSLESHWSSWEVEGSWDQGWQEPSSVEPPPEGTRL
ASEYNWGGAEPSDKGDPFAALSVRPSAQPRPDPDSWGEDNWEGLEAESRQVKAELARKKREERRREMEAK
RAEKKTTKGPMKLGARKLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH