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Report for CCDS20041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20041.1 Public Mus musculus 6 Prss59 23 108 98 CCDS HistoryNCBI Gene:73481Re-query CCDS DB by CCDS ID:20041.1Re-query CCDS DB by GeneID:73481See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031935.9 ENSMUSP00000031935.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031935.9Link to Ensembl Protein Viewer:ENSMUSP00000031935.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031935Re-query CCDS DB by Protein ID:ENSMUSP00000031935
Original member Current member EBI ENSMUST00000122181.7 ENSMUSP00000112987.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122181.7Link to Ensembl Protein Viewer:ENSMUSP00000112987.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122181Re-query CCDS DB by Protein ID:ENSMUSP00000112987
Original member Current member NCBI NM_001361930.1 NP_001348859.1 Accepted alive Link to Nucleotide Sequence:NM_001361930.1Link to Protein Sequence:NP_001348859.1Re-query CCDS DB by Nucleotide ID:NM_001361930Re-query CCDS DB by Protein ID:NP_001348859Link to BLAST:NP_001348859.1
Original member Current member NCBI NM_028550.4 NP_082826.1 Accepted alive Link to Nucleotide Sequence:NM_028550.4Link to Protein Sequence:NP_082826.1Re-query CCDS DB by Nucleotide ID:NM_028550Re-query CCDS DB by Protein ID:NP_082826Link to BLAST:NP_082826.1

Chromosomal Locations for CCDS 20041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40920992 40921141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40921707 40921852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40925977 40926227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40928512 40928680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40929441 40929480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGAAGACTTTTTTCATCTTCACTCTCTTAAGTCTCGCAGTAGCTAATACTCCCAAAGCCGTTCTGAAAG
AATATAACAATTCAGAAGAATACTTACCAGAGAATTTTAATGTTCCTTATATGGTCTATCTGCAGTCCAG
CCCAGAGCCTTGTGTTGGGACTCTCATTGACCCTCAGTGGGTGCTCACCGCTGCTCATTGTTCTTTACCA
ACTAAAATCCGACTGGGAGTTTACCGACCCAACATCAAAAATGAGAAAGAACAGATATGTAATTACTCAT
TCACTGTAGTCCATCCTAATTTTGATGCAAAATTACTGAAAAATGACTTGATGCTGATAAAACTCTCATA
TCCTGCTACTATCAACATGTATGTGGGAACTATAGCCATAGCTATGGAACCAATGGCATTTAATGAATCC
TGCTTCATACCAACATGGACCTGGAATAACTACAAAAACCTTAGTGATCCTGACATCTTGACATGGATAA
ATGAGTATTCTCTTTCCCCAAGTGACTGTTTGGACACTCTTCATCAACAGAAACAAGAAACAAGAATAAA
CATTATGTGCATAGGACATTCACTTAATGCTATGTCTGCAACTAAGGAAGTATCAGCTGCTCCAGCCATC
TGCAGTGGGAGGGTGCATGGAATATTGTCCTGGGGGAAAGCAAGTGTAGCCAATGGAAGCAAAGGCTTCT
TCACTGAAATTCATCCCTATGCAAGATGGATCTTAAAAATGATACGATCACACTGA

Translation (251 aa):
MKTFFIFTLLSLAVANTPKAVLKEYNNSEEYLPENFNVPYMVYLQSSPEPCVGTLIDPQWVLTAAHCSLP
TKIRLGVYRPNIKNEKEQICNYSFTVVHPNFDAKLLKNDLMLIKLSYPATINMYVGTIAIAMEPMAFNES
CFIPTWTWNNYKNLSDPDILTWINEYSLSPSDCLDTLHQQKQETRINIMCIGHSLNAMSATKEVSAAPAI
CSGRVHGILSWGKASVANGSKGFFTEIHPYARWILKMIRSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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