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Report for CCDS48976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48976.1 Public Mus musculus 11 Mtnap1 23 108 98 CCDS HistoryNCBI Gene:276852Re-query CCDS DB by CCDS ID:48976.1Re-query CCDS DB by GeneID:276852See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042227.14 ENSMUSP00000042025.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042227.14Link to Ensembl Protein Viewer:ENSMUSP00000042025.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042227Re-query CCDS DB by Protein ID:ENSMUSP00000042025
Original member Current member EBI ENSMUST00000106621.3 ENSMUSP00000102232.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106621.3Link to Ensembl Protein Viewer:ENSMUSP00000102232.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106621Re-query CCDS DB by Protein ID:ENSMUSP00000102232
Original member Current member NCBI NM_001361593.1 NP_001348522.1 Accepted alive Link to Nucleotide Sequence:NM_001361593.1Link to Protein Sequence:NP_001348522.1Re-query CCDS DB by Nucleotide ID:NM_001361593Re-query CCDS DB by Protein ID:NP_001348522Link to BLAST:NP_001348522.1
Original member Current member NCBI NM_177777.6 NP_808445.2 Accepted alive Link to Nucleotide Sequence:NM_177777.6Link to Protein Sequence:NP_808445.2Re-query CCDS DB by Nucleotide ID:NM_177777Re-query CCDS DB by Protein ID:NP_808445Link to BLAST:NP_808445.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348522.1 558 Q6PIX9-1 558 100% 0 0
NP_808445.2 558 Q6PIX9-1 558 100% 0 0

Chromosomal Locations for CCDS 48976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113687781 113689221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113691729 113691833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113692395 113692502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113694512 113694534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGGTGCAGCCGAGCCCCGGATGGAAGTGTGTCCTTATTGTAAGAAGCCGTTTAAGCGTTTAAAATCCC
ACTTGCCGCACTGTAAAATGAGAGGACCGTCCATATCTGCTGATCAAAATGTTTCTCAGTCCAAGCCAGC
TGCACTTGCTCAAAAAGAGAAGAGTCCTACCAGAGACTTGACCAGAGCTAAAGAGAAGGAGCTAGAGGTA
GACCGTCCGAAAAGAGCTGTGAAAGCAGAAACCAGCAGGGCATCGTGGACAGCTGCAGCCTCTCCGCTTC
CAGAGGGGATCTTGGGAAGCGTGCGGATAACAAAAGCAGAAGGAGAAAACAAAGATCAAAATCAGTTCTC
CTTCCAAGCACTCAGCCAGGCCAAGCCAGAGGTGACTCTGCAGAGAGTCACAACCCCTTGGTCTCCTGCG
TCAGATGCCACCTCTCCTAAGAGAGAACTCACCCAAGATGTGTCTGAGTCCAAGGGAAGTCCGTGTCCCT
CAGAGACAGAAGCGCCTTCACTGGTCAGCTCAGTGGAACCTTTTCTTGCTAATCAAGATAGAAAATATTC
ATCAACCCAGCCTCATGCTAACCCAGCCACTTCTGTCGGGCTCAAGTTAGGCACAGTTGACCCCCAAAGA
CAGAAGCTTCGGGTAAAATTATTAGATGTGCCTCTTAGTGATCGTCATTCTCCAAAGAGTGGCAGCCACG
GGGTTCAGAGAGTAACACCCTCAGTGTTGAGCAGGGAGGAAGGTTCCCAAGATGGAGGCCACCTCTTGGG
AGTCTCTGCCCACCCTGGTAACACCAAGACCCAGAAGTCAGAATCACTCCTCCTGGGCCTTCACACTGGC
CTGCTGGGTAAAGCACCGGTCAGAGAGCATCAGGAACTTGGCCTTGGCATGGAGTTGAGCCAGAGCAAGG
GAAATACTGAGAACAGGATGTCTGTCACCAACGTACAGGAAGGGGCTGGCTTGGGCCAAGGTGGTAAGGA
CCCCATTACAGCCACAAAGGCAAAGCCACATACCGCCCTCGAACTTAGGAACGTGTTCATGCCGGAGTCA
GGGAATCAGAGCCTCACCTCTCCGGCTGTGACATCTACTCCAGAAGAGAATGCTCAATTCTGTGGCCAAA
GCCATGTCCCTGCCATAACACTGTCAGTGGGAAGTGTGAGAGATGTTCTGGAACCCACATCTTTCTACCA
GCCCCACACGGCCCAGGCAGGGCACTGCCTAATGTCATACTCAGCTCAGTATCCCGTTCCTAAAACCTTC
GTTGGGCATGTTGCTGCTGTTACCTCAGGGGCTCCTCCCAGGTCCGTGGGACTGGAGTGGTTTCCAGAAC
TCTATCCTGCTTATGTTGGACTAGGGGTGCTGCCAAGGAGGCCTCCGCCTTGGAGCTTAGCAGCTCAGGT
CCCTCCTCTTCCCACTTTGCAGGGCAGGAGCGTCTCGAAAGTTCCTTGGTGGGGACGAAGTTCGGCTGAT
AGCAGGAGTCTGGAACCCCTGACGCTTACAACTTCCAGCCTCCCTCTAATGAGACTCTTGGGAGCTGTGC
ACAAAGGGTGGGTGCAGTGCAACACCACCATAAAGAAGAGTGGTGTCGGTGGTCTCACGATGCTCTTCGC
TGGCTACTTTATCCTGTGCTGTAACTGGAGCTTCAAGCATCTGAAGCTGCAGCACTGGCGTAAGTAA

Translation (558 aa):
MGAAEPRMEVCPYCKKPFKRLKSHLPHCKMRGPSISADQNVSQSKPAALAQKEKSPTRDLTRAKEKELEV
DRPKRAVKAETSRASWTAAASPLPEGILGSVRITKAEGENKDQNQFSFQALSQAKPEVTLQRVTTPWSPA
SDATSPKRELTQDVSESKGSPCPSETEAPSLVSSVEPFLANQDRKYSSTQPHANPATSVGLKLGTVDPQR
QKLRVKLLDVPLSDRHSPKSGSHGVQRVTPSVLSREEGSQDGGHLLGVSAHPGNTKTQKSESLLLGLHTG
LLGKAPVREHQELGLGMELSQSKGNTENRMSVTNVQEGAGLGQGGKDPITATKAKPHTALELRNVFMPES
GNQSLTSPAVTSTPEENAQFCGQSHVPAITLSVGSVRDVLEPTSFYQPHTAQAGHCLMSYSAQYPVPKTF
VGHVAAVTSGAPPRSVGLEWFPELYPAYVGLGVLPRRPPPWSLAAQVPPLPTLQGRSVSKVPWWGRSSAD
SRSLEPLTLTTSSLPLMRLLGAVHKGWVQCNTTIKKSGVGGLTMLFAGYFILCCNWSFKHLKLQHWRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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