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Report for CCDS88122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88122.1 Public Mus musculus 11 Limk2 23 108 98 CCDS HistoryNCBI Gene:16886Re-query CCDS DB by CCDS ID:88122.1Re-query CCDS DB by GeneID:16886See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101640.9 ENSMUSP00000099163.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101640.9Link to Ensembl Protein Viewer:ENSMUSP00000099163.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101640Re-query CCDS DB by Protein ID:ENSMUSP00000099163
Original member Current member NCBI NM_001361623.1 NP_001348552.1 Accepted alive Link to Nucleotide Sequence:NM_001361623.1Link to Protein Sequence:NP_001348552.1Re-query CCDS DB by Nucleotide ID:NM_001361623Re-query CCDS DB by Protein ID:NP_001348552Link to BLAST:NP_001348552.1

Chromosomal Locations for CCDS 88122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3345740 3345884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3346235 3346392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347052 3347107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347574 3347748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3348594 3348659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350392 3350448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350642 3350773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3352291 3352377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3352900 3352917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3353277 3353463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355273 3355469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355811 3355916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3358110 3358298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3358995 3359104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3360451 3360586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3370969 3371021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGGGAGTTACTTGTCTGTCCCGGCTTACTTCACCTCCAGAGACCCCTTTAGGTGTTCCGAATGCCAGG
AATCCCTCACCAACTGGTACTATGAGAAGGATGGGAAGCTGTACTGCCACAAGGACTACTGGGCCAAGTT
TGGAGAATTCTGCCATGGGTGCTCCCTGCTGATGACGGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTAC
CACCCAGAGTGCTTTGCCTGCATGAGTTGCAAGGTGATCATTGAGGATGGAGATGCATATGCCCTGGTGC
AGCACGCTACACTCTACTGTGGGAAGTGCCACAACGAGGTGGTGCTGGCACCCATGTTTGAAAGACTGTC
TACAGAGTCTGTCCAGGATCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCTACCACCGAGTGT
AGACGCGGCTTCTCGGTGACTGTGGAAAGTGCCTCTTCTAACTATGCCACCACCGTTCAAGTGAAAGAGG
TCAACCGGATGCACATCAGTCCCAACAACCGAAATGCCATCCACCCTGGGGACCGCATCTTGGAGATCAA
TGGGACCCCTGTCCGTACTCTGCGAGTAGAGGAGGTGGAGGATGCAATAAAGCAGACAAGCCAGACACTT
CAGCTGCTGATTGAACATGACCCTGTGCCCCAGCGCCTGGACCAGCTACGGCTAGATGCCCGACTTCCTC
CCCACATGCAGAGCACCGGACACACGCTCATGCTCAGCACCTTGGACACCAAGGAGAATCAGGAGGGGAC
ACTGAGGAGACGTTCTCTGAGGCGCAGTAACAGCATCTCCAAGTCTCCGGGCCCCAGCTCCCCCAAGGAG
CCCCTGCTCCTCAGCCGGGACATAAGCCGCTCAGAATCCCTCCGCTGCTCTAGCAGCTACTCCCAGCAGA
TCTTCCGGCCCTGCGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCAGGCCATCAAGAG
CTGGGAGGGGGGTCAGGTGACTCACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTGATCCGCTGT
GATGAGGAAACCCAGAAGACTTTCCTGACTGAGGTGAAAGTGATGCGGAGCCTGGACCACCCTAATGTGC
TCAAGTTCATCGGAGTTCTGTACAAGGACAAGAAGCTGAATCTGCTGACCGAGTACATCGAGGGAGGCAC
ACTCAAAGACTTCCTGCGCAGTGTGGACCCGTTCCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATC
TCCTCTGGAATGGCCTATTTACACTCCATGTGCATCATCCACCGGGACCTGAACTCACACAACTGTCTCA
TCAAATTGGACAAGACAGTGGTAGTAGCCGACTTTGGGCTGTCACGGCTTATAGTAGAAGAGAGGAAAAG
GCCTCCAGTAGAGAAGGCCACCACCAAGAAACGCACCTTACGCAAGAGTGACCGCAAAAAGCGCTACACT
GTGGTGGGAAACCCCTACTGGATGGCCCCCGAGATGCTGAATGGCAAGAGCTACGATGAGACGGTGGATG
TCTTCTCTTTTGGGATCGTTCTCTGTGAGATCATTGGGCAGGTATATGCGGATCCTGATTGCCTGCCCCG
CACACTGGACTTTGGCCTCAATGTTAAGCTTTTCTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCC
TTCTTCCCCCTGGCTGCTATCTGCTGCAAACTAGAGCCTGAAAGCAGACCGGCATTCTCAAAGCTGGAGG
ACTCGTTCGAGGCGCTCTCCCTGTTCTTGGGGGAGCTGGCCATCCCACTGCCAGCAGAGCTGGAAGACCT
GGACCACACTGTGAGCATGGAGTATGGCCTAACCCGGGACTCGCCACCCTAG

Translation (623 aa):
MGSYLSVPAYFTSRDPFRCSECQESLTNWYYEKDGKLYCHKDYWAKFGEFCHGCSLLMTGPAMVAGEFKY
HPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVLAPMFERLSTESVQDQLPYSVTLISMPATTEC
RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTL
QLLIEHDPVPQRLDQLRLDARLPPHMQSTGHTLMLSTLDTKENQEGTLRRRSLRRSNSISKSPGPSSPKE
PLLLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGFFGQAIKSWEGGQVTHKATGKVMVMKELIRC
DEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSVDPFPWQQKVRFAKGI
SSGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKATTKKRTLRKSDRKKRYT
VVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPA
FFPLAAICCKLEPESRPAFSKLEDSFEALSLFLGELAIPLPAELEDLDHTVSMEYGLTRDSPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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