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Report for CCDS24979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24979.1 Public Mus musculus 11 4933427D14Rik 23 108 98 CCDS HistoryNCBI Gene:74477Re-query CCDS DB by CCDS ID:24979.1Re-query CCDS DB by GeneID:74477See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108506.9 ENSMUSP00000104146.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108506.9Link to Ensembl Protein Viewer:ENSMUSP00000104146.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108506Re-query CCDS DB by Protein ID:ENSMUSP00000104146
Original member Current member EBI ENSMUST00000238653.1 ENSMUSP00000158687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238653.1Link to Ensembl Protein Viewer:ENSMUSP00000158687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238653Re-query CCDS DB by Protein ID:ENSMUSP00000158687
Original member Current member NCBI NM_001361564.1 NP_001348493.1 Accepted alive Link to Nucleotide Sequence:NM_001361564.1Link to Protein Sequence:NP_001348493.1Re-query CCDS DB by Nucleotide ID:NM_001361564Re-query CCDS DB by Protein ID:NP_001348493Link to BLAST:NP_001348493.1
Original member Current member NCBI NM_028963.3 NP_083239.1 Accepted alive Link to Nucleotide Sequence:NM_028963.3Link to Protein Sequence:NP_083239.1Re-query CCDS DB by Nucleotide ID:NM_028963Re-query CCDS DB by Protein ID:NP_083239Link to BLAST:NP_083239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348493.1 959 Q6A000 959 99.3744% 0 6
NP_083239.1 959 Q6A000 959 99.3744% 0 6

Chromosomal Locations for CCDS 24979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72155321 72155438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72158792 72159016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72159400 72159520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72165517 72165598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72166638 72166823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72168716 72168802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72169781 72169859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72175203 72175292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72175487 72175576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72176661 72176780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72178405 72178571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72180403 72180626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72189548 72189758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72191419 72191634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72194560 72194622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72195783 72195889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72198363 72198963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72202412 72202504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2880 nt):
ATGGGACCAAGCCAGCCAGCTTCTACATGTGTTCATCTAGCACCCAGTCTCCAACTGGATGCCATGAGTG
ACCCCAGGAACCTTCAGCCCCAGAACCAGCTGCAATTTAATAGGAATGTTCCTACAAATCCCAGCAACTT
GGCAGTCCGGTACTCTTGCCCACATGGAATTAAAATTGAAAAACTGAAACACTCATACAATGAATTGAAT
CATGGTAAAGACTTGGATTTTAAAGCTGGAAATGAATTAAGCAGTTCTGTCTCATTTTCTGTCATATCAG
AAGAGAGGCTTAGCTATGCTGTCCACCTAGCCAAGAGAGATGTAAAACGAAGACAATTTGAAGAACACGT
GAAAGATCATCTCAGAAGTCTGCCCCATAGCTCTCACAAAGGTATGCACACCAAGGTGGAAAGGAAGGAC
TCCAAGAGTCAGGATGTCTGTCATTGCAGCCACCAGCCGTCCAGAGTAAGCCTCTCCAGCTCGGGCGCTA
AGGTGTATGTGTACACATCTCAGCCAGGACGAGCTGATCTTACTGTGCCAAATTCACCACCTACCCATGA
TCCAGGACTTCAGCCGCAACCCAGAATAGAGGAGAACAAAAACCTGTGGGAACAGAAAGGCCTGCTAGAA
GTTCAGCGACTCCAAAAGGAATTGAGTGGTTGTATCCGTAAGATAGAAGCACTAACGAAAAAAGATAGAC
TAGAAGAGGCTTTGGATCCAGATGAAGAGCATCGAATCCGAGTCAGGAGACAGGAGCAAGCCGTGCGCTG
TGCCCGCATGCTCTACGTTCTTCAGCAGCAGGTAAAAGAAATCCAGGAAGAATTGGATAAATTGAGTCCA
CAAAAAATTAAACATACTAAGAAGTCATGGGCAGTGTCTAGGCTGGCAGCCGCTCATCGAGCAGCCATCC
GGGCCTTGCAAGTGTTTGTCACTCAGTTTACTGACCGAGGGGAGCACCCAGTTCCTGCTCGGTGTAGGGA
GCTGGGCAGCCTTATTCGTCAGCTGTCGCTGTGTTCCGCCAAGCTGGATGCTGATCCTTCTGTGCCAGAC
GTGGTCATAGACATCTTGCAGCAAATCGAGGCTTTGGAGTCTCTCCTGGAAAAGAAATTGTCACCTAAAA
AGGCAAAGAAATGTTTCACAGAAATTCGGAGCAGATTTCCTGTTGGTAGCCAAAAGATCTTAGAGAGATG
GCCAACTGTACTGCCCAAAAGTGAGAGGAGACCCTTGGTCACAAAGGAGACATTCCCACAGGAAACCAGT
CGACCTCCTGTGGCAAAGAGGCTTCTTGCAGCTATGTGTCAGCCTGATGGGGAGCTTCAGAGGCTGGAGA
GTGAACCCGATGTGCTGGATGCACATCTTCTTCCAGAAGAAGCCCCTCGTATAGAGGACAATGGTACAGA
CTTCAAAGACGGAACATTAACCCCAGCCAAACCACAGGCAGTGAGAAGGAAGGCTTTGACAGGGTCCATG
CCGATTAGGAAGAAAGATACTGTGGAGTCAGCCAGACCACAGCAGGGACTCCACATAGCTGAAAGAAATC
GACCAAACCAACCTTACAGCAAAAGCAGGTTGCAGCAGACAACAGTGTCATCCAGATTAAAAATGAACCG
ACAGCCTATGAAAGACCATAGGGCTCCTTGGATACCTCCAAACCCCACATCCCCACCAGCCTCTCCTAAA
TGTGCTGCGTGGATGAAGGTGAAGTACAGCCCCAGGGATGCTGCAAAGGAGCAGTCCCTACAGCAAGAGG
ATACCCACAAGGAAAGTCAGCTGAGAGGTGATGCTGAGCAAGAAGCAGCCAGGCTTTCTTGGCCAGATGC
TGAGTCTTCCAAAAGACTGAAGGAACTAGAAGAATTGGAAGCCAAAGAAATGGAAAGAAAGCAAAAGCAG
AGGCTCAATTGGCTTGAGGCTGAGACTTCTAGAAGAACCAAAGAGTTGGATGAACTGAAAGCTGAAGAGA
TGGATAGACTTCAAAAATTAAGTGTCTCTGCCACCCAGTTAGCTGACAAGGTGGAGGAGGCAGTTCTGGA
GCGGTTGAAGCCCCTCTTGATCAAGGCCCAGAGAGTGAATTCTTCGGTGGAAGCAAATAGTCATTTGAAG
GATCGTCCGTCACGGCACGCAGCAGCAGCAGCCCAGCCTGCCGAGCAGGCTTCAGATGTACGTTTTGAAT
CCAGGAATATTCCTCAGCTGCGTGACTGTTTGGAAGATACTGCTCATGAGCTCTGGGCTAGGACTCAGGA
TAAGATCTTGGGGTCAGAAACTTCAGCCAGATTGGGGGACAGCAAGGACAGCCCAGATCTAGAGACCATG
ATGCTCCGGATGGAAGAAATGGAAAAATACCAGGAGACAGTTCGCCAAAGATATAATAAAATTGTATACG
CTGACCCTCACTTATGGATGCACGAAGAAAGAAATGACCAGAACACCCCAGCTGTAAGTGAAGGACCTTT
GGCTTCCCACCCAATCAAGATCACCAAGACAGCAACTCAAAAGTGCCCTGCTGTGAACATCTTGTTAGAA
AGGCCCTGCAATGCCAACTCACTGGATGAAAGTGTAACAACAGAGGAGGGATCGGAGAAAAGGGAGGCTC
CCCTGCCCCTCTCCAGAGAAGACCTGCATCAGAGAAAAGGGCAAACTCCCCTCTCAGTCCCACCCAGGAT
GCGGCACAGCATTGGTGCTTACTGTAGCCGGTTTGAGCAATTCCTACGGATCATAGCTCATGAGGCTATA
GGCTCCTTCAACCCATGGCTAATAGCTGAAAGCTTTTCAGATGAGCTGGTAGATGAAGCACTGGGGGCCG
TGGCTGCAGAACTGCAGGATGTGTGTGAAGACTATGCAGAAGCTGTGTTCACCTCAGAGTTCCTAGAGGC
CGCTGCATGA

Translation (959 aa):
MGPSQPASTCVHLAPSLQLDAMSDPRNLQPQNQLQFNRNVPTNPSNLAVRYSCPHGIKIEKLKHSYNELN
HGKDLDFKAGNELSSSVSFSVISEERLSYAVHLAKRDVKRRQFEEHVKDHLRSLPHSSHKGMHTKVERKD
SKSQDVCHCSHQPSRVSLSSSGAKVYVYTSQPGRADLTVPNSPPTHDPGLQPQPRIEENKNLWEQKGLLE
VQRLQKELSGCIRKIEALTKKDRLEEALDPDEEHRIRVRRQEQAVRCARMLYVLQQQVKEIQEELDKLSP
QKIKHTKKSWAVSRLAAAHRAAIRALQVFVTQFTDRGEHPVPARCRELGSLIRQLSLCSAKLDADPSVPD
VVIDILQQIEALESLLEKKLSPKKAKKCFTEIRSRFPVGSQKILERWPTVLPKSERRPLVTKETFPQETS
RPPVAKRLLAAMCQPDGELQRLESEPDVLDAHLLPEEAPRIEDNGTDFKDGTLTPAKPQAVRRKALTGSM
PIRKKDTVESARPQQGLHIAERNRPNQPYSKSRLQQTTVSSRLKMNRQPMKDHRAPWIPPNPTSPPASPK
CAAWMKVKYSPRDAAKEQSLQQEDTHKESQLRGDAEQEAARLSWPDAESSKRLKELEELEAKEMERKQKQ
RLNWLEAETSRRTKELDELKAEEMDRLQKLSVSATQLADKVEEAVLERLKPLLIKAQRVNSSVEANSHLK
DRPSRHAAAAAQPAEQASDVRFESRNIPQLRDCLEDTAHELWARTQDKILGSETSARLGDSKDSPDLETM
MLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQNTPAVSEGPLASHPIKITKTATQKCPAVNILLE
RPCNANSLDESVTTEEGSEKREAPLPLSREDLHQRKGQTPLSVPPRMRHSIGAYCSRFEQFLRIIAHEAI
GSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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