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Report for CCDS44837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44837.1 Public Homo sapiens 12 PTPRO 24 110 108 CCDS HistoryNCBI Gene:5800Re-query CCDS DB by CCDS ID:44837.1Re-query CCDS DB by GeneID:5800See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445537.6 ENSP00000393449.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445537.6Link to Ensembl Protein Viewer:ENSP00000393449.2Re-query CCDS DB by Nucleotide ID:ENST00000445537Re-query CCDS DB by Protein ID:ENSP00000393449
Original member Current member EBI ENST00000442921.7 ENSP00000404188.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442921.7Link to Ensembl Protein Viewer:ENSP00000404188.2Re-query CCDS DB by Nucleotide ID:ENST00000442921Re-query CCDS DB by Protein ID:ENSP00000404188
Original member Current member EBI ENST00000674388.1 ENSP00000501494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674388.1Link to Ensembl Protein Viewer:ENSP00000501494.1Re-query CCDS DB by Nucleotide ID:ENST00000674388Re-query CCDS DB by Protein ID:ENSP00000501494
Original member Current member NCBI NM_030669.3 NP_109594.1 Accepted alive Link to Nucleotide Sequence:NM_030669.3Link to Protein Sequence:NP_109594.1Re-query CCDS DB by Nucleotide ID:NM_030669Re-query CCDS DB by Protein ID:NP_109594Link to BLAST:NP_109594.1
Original member Current member NCBI NM_030671.3 NP_109596.1 Accepted alive Link to Nucleotide Sequence:NM_030671.3Link to Protein Sequence:NP_109596.1Re-query CCDS DB by Nucleotide ID:NM_030671Re-query CCDS DB by Protein ID:NP_109596Link to BLAST:NP_109596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109594.1 405 Q16827-3 405 100% 0 0
NP_109596.1 405 Q16827-3 405 100% 0 0

Chromosomal Locations for CCDS 44837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 15549223 15549226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15551551 15551671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15557455 15557523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15560193 15560276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15565593 15565628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15569417 15569498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15578853 15578943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15580039 15580115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15580697 15580831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15581679 15581801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15586897 15587051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15589455 15589590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 15594937 15595041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGTTACAGAGATGAATCCCAATGTGGTAGTGATCTCCGTGCTGGCCATCCTTAGCACACTTTTAATTG
GACTGTTGCTTGTTACCCTCATTATTCTTAGGAAAAAGCATCTGCAGATGGCTAGGGAGTGTGGAGCTGG
TACATTTGTCAATTTTGCATCCTTAGAGAGGGATGGAAAGCTTCCATACAACTGGCGTAGGAGTATATTT
GCTTTCTTAACCCTGCTACCCTCATGTCTTTGGACTGATTATCTTTTGGCATTTTATATTAATCCTTGGA
GTAAAAATGGTTTAAAGAAGAGGAAACTGACAAACCCGGTTCAACTGGATGACTTTGATGCCTATATTAA
GGATATGGCCAAAGACTCTGACTATAAATTTTCTCTTCAGTTTGAGGAGTTGAAATTGATTGGACTGGAT
ATCCCACACTTTGCTGCAGATCTTCCACTGAATCGATGTAAAAACCGTTACACAAACATCCTACCATATG
ACTTCAGCCGTGTGAGATTAGTCTCCATGAATGAAGAGGAAGGTGCAGACTACATCAATGCCAACTATAT
TCCTGGATACAACTCACCCCAGGAGTATATTGCCACCCAGGGGCCACTGCCTGAAACCAGAAATGACTTC
TGGAAGATGGTCCTGCAACAAAAGTCTCAGATTATTGTCATGCTCACTCAGTGTAATGAGAAAAGGAGGG
TGAAATGTGACCATTACTGGCCATTCACGGAAGAACCTATAGCCTATGGAGACATCACTGTGGAGATGAT
TTCAGAGGAAGAGCAGGACGACTGGGCCTGTAGACACTTCCGGATCAACTATGCTGACGAGATGCAGGAT
GTGATGCATTTTAACTACACTGCATGGCCTGATCATGGTGTGCCCACAGCAAATGCTGCAGAAAGTATCC
TGCAGTTTGTACACATGGTCCGACAGCAAGCTACCAAGAGCAAAGGTCCCATGATCATTCACTGCAGTGC
TGGCGTGGGACGGACAGGAACATTCATTGCCCTGGACAGGCTCTTGCAGCACATTCGGGATCATGAGTTT
GTTGACATCTTAGGGCTGGTGTCAGAAATGAGGTCATACCGGATGTCTATGGTACAGACAGAGGAGCAGT
ACATTTTTATCCATCAGTGTGTGCAACTGATGTGGATGAAGAAGAAGCAGCAGTTCTGCATCAGTGATGT
CATATACGAGAATGTTAGCAAGTCCTAG

Translation (405 aa):
MVTEMNPNVVVISVLAILSTLLIGLLLVTLIILRKKHLQMARECGAGTFVNFASLERDGKLPYNWRRSIF
AFLTLLPSCLWTDYLLAFYINPWSKNGLKKRKLTNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLD
IPHFAADLPLNRCKNRYTNILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDF
WKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYADEMQD
VMHFNYTAWPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEF
VDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMKKKQQFCISDVIYENVSKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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