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Report for CCDS29282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29282.1 Public Mus musculus 18 Slc26a2 23 108 98 CCDS HistoryNCBI Gene:13521Re-query CCDS DB by CCDS ID:29282.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29282.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146409.7 ENSMUSP00000119447.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146409.7Link to Ensembl Protein Viewer:ENSMUSP00000119447.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146409Re-query CCDS DB by Protein ID:ENSMUSP00000119447
Original member Current member NCBI NM_007885.2 NP_031911.1 Accepted alive Link to Nucleotide Sequence:NM_007885.2Link to Protein Sequence:NP_031911.1Re-query CCDS DB by Nucleotide ID:NM_007885Re-query CCDS DB by Protein ID:NP_031911Link to BLAST:NP_031911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031911.1 739 Q62273 739 100% 0 0

Chromosomal Locations for CCDS 29282.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61198138 61199658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61201681 61202379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGTCTTCAGAAAATAAAGAGCAGCATGACCTCTCACCGAGGGACTTACCTGAAGAAGCCTTTGGTTTCC
CATCTGAGCTCCCCCTGGAGACTCAAAGAAGGTCAGGCACTGACTTGAGGCAGTCTGAGACCGGTCATGG
CCGGAGAGCTTTCCGTAGGATCCACATGGAGCTCCGTGAGAAACCAGACACAGACATCAAACAGTTTGTC
ATCAGAGAGCTCCAGAAGAGTTGCCAGTGCAGCGCAGCCAAAGTCAGAGACGGGGCTTTTGATTTCTTTC
CTGTTTTGCGGTGGCTCCCAAAATATGACCTGAAGAAAAACATTTTAGGTGATGTGATGTCTGGCCTGAT
TGTGGGTATCCTGTTGGTGCCCCAGTCCATTGCTTACTCCCTGCTGGCTGGCCAGGAGCCTATATATGGT
CTATATACATCATTTTTTGCCAGCATTATTTATTTCCTGTTTGGTACATCCCGCCACATCTCTGTGGGCA
TTTTTGGAATACTGTGCCTTATGATTGGTGAGGTTGTTGACCGAGAACTACATAAAGCCTGCCCTGACAC
TGATGCTACGTCATCTTCGATAGCAGTGTTTTCAAGTGGATGTGTGGTTGTAAACCATACATTAGACGGA
CTCTGTGATAAAAGCTGCTATGCAATTAAAATTGGCAGCACTGTGACCTTCATGGCTGGAGTTTATCAGG
TAGCAATGGGCTTCTTTCAAGTGGGCTTTGTCTCTGTCTACCTCTCCGACGCCTTGCTGAGCGGGTTTGT
CACTGGCGCCTCCTTCACCATCCTCACGTCTCAGGCCAAGTACCTCCTTGGGCTGAGCCTTCCTCGGAGT
CATGGTGTCGGCTCAGTCATTACTACCTGGATCCACATCTTCAGAAACATCCGTAACACCAACATCTGTG
ATCTCATCACCAGCCTTTTATGTCTTCTGGTCCTCGTGCCATCCAAAGAACTCAATGAGCACTTCAAGGA
CAAGCTCAAGGCTCCAATTCCGGTCGAGCTCATTGTCGTTGTGGCGGCCACATTGGCTTCTCATTTTGGA
AAACTAAATGGGAATTACAATTCCAGTATTGCTGGACACATTCCCACTGGGTTTATGCCACCCAAAGCAC
CAGACTGGAGCCTCATTCCTAATGTGGCTGTAGATGCAATAGCTATTTCTATCATTGGTTTTGCTATCAC
TGTATCACTTTCTGAGATGTTTGCCAAGAAACATGGCTACACGGTCAAAGCAAACCAAGAAATGTATGCC
ATTGGCTTTTGCAATATCATACCTTCCTTCTTCCACTGCATAACTACTAGTGCAGCTCTTGCAAAGACAT
TGGTTAAAGAGTCAACAGGCTGCCAGACGCAGCTGTCAGCTATAGTGACAGCCCTTGTCCTTTTGTTGGT
CCTTCTGGTAATAGCTCCTTTATTCTATTCCCTTCAAAAATGTGTCCTTGGTGTGATCACTATTGTAAAT
CTCCGGGGCGCACTTCTGAAATTTAGAGACCTGCCAAAGATGTGGAGGCTAAGCAGAATGGATACAGTTA
TCTGGTTTGTGACTATGCTGTCCTCCGCTCTGTTAAGCACTGAAATAGGCCTGCTGGTTGGGGTTTGTTT
TTCAATGTTCTGTGTGATCCTCCGTACTCAGAAGCCAAAGAATTCACTGCTTGGTTTAGAAGAAGAATCT
GAAACCTTTGAATCCATTTCCACTTACAAGAACCTTCGGAGCAAGTCCGGCATCAAGGTTTTCCGCTTCA
TAGCCCCTCTCTACTACATAAACAAAGAGTGCTTTAAATCAGCTTTGTACAAGAAAGCTCTTAACCCAGT
CTTGGTAAAGGCAGCTTGGAAAAAGGCAGCAAAGAGAAAACTCAAAGAAGAAATGGTGACCTTTCGTGGG
GACCCGGATGAAGTTTCAATGCAGCTTTCCCATGATCCCTTGGAGGTGCACACTATCGTGATCGACTGTA
GTGCCATACAGTTTTTAGACACAGCAGGAATCCACACACTGAAAGAAGTTCGCCGGGATTATGAAGCCGT
TGGGATCCAGGTTTTACTGGCGCAGTGCAATCCTTCTGTGAGGGATTCCTTGGCCAGAGGAGAATATTGC
AAAAAGGAAGAGGAAACCCTTCTCTTCTACAGTCTGTCTGAAGCAGTAGCCTTTGCAGAAGACTCTCAGA
ATCAGAAAGGGGTGTGTGTTGTCAACGGTCTGAGTCTCTCTGGTGACTGA

Translation (739 aa):
MSSENKEQHDLSPRDLPEEAFGFPSELPLETQRRSGTDLRQSETGHGRRAFRRIHMELREKPDTDIKQFV
IRELQKSCQCSAAKVRDGAFDFFPVLRWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYG
LYTSFFASIIYFLFGTSRHISVGIFGILCLMIGEVVDRELHKACPDTDATSSSIAVFSSGCVVVNHTLDG
LCDKSCYAIKIGSTVTFMAGVYQVAMGFFQVGFVSVYLSDALLSGFVTGASFTILTSQAKYLLGLSLPRS
HGVGSVITTWIHIFRNIRNTNICDLITSLLCLLVLVPSKELNEHFKDKLKAPIPVELIVVVAATLASHFG
KLNGNYNSSIAGHIPTGFMPPKAPDWSLIPNVAVDAIAISIIGFAITVSLSEMFAKKHGYTVKANQEMYA
IGFCNIIPSFFHCITTSAALAKTLVKESTGCQTQLSAIVTALVLLLVLLVIAPLFYSLQKCVLGVITIVN
LRGALLKFRDLPKMWRLSRMDTVIWFVTMLSSALLSTEIGLLVGVCFSMFCVILRTQKPKNSLLGLEEES
ETFESISTYKNLRSKSGIKVFRFIAPLYYINKECFKSALYKKALNPVLVKAAWKKAAKRKLKEEMVTFRG
DPDEVSMQLSHDPLEVHTIVIDCSAIQFLDTAGIHTLKEVRRDYEAVGIQVLLAQCNPSVRDSLARGEYC
KKEEETLLFYSLSEAVAFAEDSQNQKGVCVVNGLSLSGD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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