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Report for CCDS40673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40673.1 Public Mus musculus 9 Rps27l 23 108 98 CCDS HistoryNCBI Gene:67941Re-query CCDS DB by CCDS ID:40673.1Re-query CCDS DB by GeneID:67941See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040917.13 ENSMUSP00000046016.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040917.13Link to Ensembl Protein Viewer:ENSMUSP00000046016.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040917Re-query CCDS DB by Protein ID:ENSMUSP00000046016
Original member Current member NCBI NM_026467.5 NP_080743.1 Accepted alive Link to Nucleotide Sequence:NM_026467.5Link to Protein Sequence:NP_080743.1Re-query CCDS DB by Nucleotide ID:NM_026467Re-query CCDS DB by Protein ID:NP_080743Link to BLAST:NP_080743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080743.1 84 Q6ZWY3 84 100% 0 0

Chromosomal Locations for CCDS 40673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 66946175 66946180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66946831 66946939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66947587 66947697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66949329 66949357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (255 nt):
ATGCCCCTGGCTAGAGATCTGTTACACCCTTCCTTGGAGGAGGAGAAGAAAAAACATAAGAAGAAACGGC
TGGTTCAGAGCCCAAATTCTTACTTCATGGATGTGAAATGTCCAGGTTGCTACAAGATTACTACAGTTTT
CAGCCATGCACAGACTGTGGTTCTTTGTGTGGGTTGTTCAACTGTGTTGTGCCAGCCCACAGGAGGAAAA
GCCAGGCTCACAGAAGGCTGTTCATTTAGAAGAAAGCAACACTAA

Translation (84 aa):
MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGK
ARLTEGCSFRRKQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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