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Report for CCDS39822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39822.1 Public Mus musculus 7 Vmn1r171 23 108 98 CCDS HistoryNCBI Gene:81012Re-query CCDS DB by CCDS ID:39822.1Re-query CCDS DB by GeneID:81012See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078458.3 ENSMUSP00000077552.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078458.3Link to Ensembl Protein Viewer:ENSMUSP00000077552.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000078458Re-query CCDS DB by Protein ID:ENSMUSP00000077552
Original member Current member NCBI NM_030737.3 NP_109662.1 Accepted alive Link to Nucleotide Sequence:NM_030737.3Link to Protein Sequence:NP_109662.1Re-query CCDS DB by Nucleotide ID:NM_030737Re-query CCDS DB by Protein ID:NP_109662Link to BLAST:NP_109662.1

Chromosomal Locations for CCDS 39822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23632352 23633302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGATCACTATTCCGTTGACCAATGAAGTTGTCTCCATGTTGTCTCAAAATAAATCTGTGAAAACCACAG
AGGAAGTGGCTCTTCAGATCCTCTTGCTTTGCCAGGTTGGGGTTGGAACTGCAGTCAACATTTTTCTGAT
TGTTCATAATTTATCTCCAATCTTGAATGGATCTCAACAGAGACCCATAAAAGTCATTCTAGCCAACTTA
GCTGTGGGCAATACCTTGATTCTCCTCTTTGCATTTCCAAACAATATGACACTTTTTGTTCCAAAGGACC
CCCCAACTGACCTAAAATGTAAACTTGGGTACTTCATTTGGCTGGTGGCTCGAAGTACAAACATGTGCTC
CACCTGCTCTCTGAGCACTTATCAGCTTGTCACTCTTGCTCCAGGTACCTGGGGTAGGGTGATGCTCCGT
GGAAGAGCCCCCAAATTTGTGAGGTATATTTGTTATAGTTGTTGGTTGTCCAGTGTCTTAAATAATGCTC
ACATTCCAATGAAAGTCAGTGGTCCCCAGAAAACACATAATGATACCAATACTAAAAACAAATGGGTTTG
CTCCACCACTGGTTTCAGTATAGGCATGCGCATCTTGTCATTTGCCCATGATGCAGTGTTCATCAGCATC
ATCATCTGGAGCAGTGTCTCCATGGTTATTCTCCTGAACAGACACCACCAAAGATTGCAGCATATTCAGT
CCCCCAATCAGAAGCTCAGAGTTCATGCTGAGACTAGAGCAGCCCACACCATCCTGATGCTGGTGGTCAC
ATTTGTGACCTGTTATCTTCTAGACTGTATTTGTACTTTTCTTCACATTTCCTTTGTGGACTCTCGGCTC
TGGTTAAGGCGTGTCAAAGAAATTTTGGCTGTAAGCTTCCCTACCTTTTCTCCATTACTCTTGATCTTTA
GGGATCCCAATGATCCTTGTTCTCTGCTATTCAGCTGCTGA

Translation (316 aa):
MITIPLTNEVVSMLSQNKSVKTTEEVALQILLLCQVGVGTAVNIFLIVHNLSPILNGSQQRPIKVILANL
AVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLR
GRAPKFVRYICYSCWLSSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISI
IIWSSVSMVILLNRHHQRLQHIQSPNQKLRVHAETRAAHTILMLVVTFVTCYLLDCICTFLHISFVDSRL
WLRRVKEILAVSFPTFSPLLLIFRDPNDPCSLLFSC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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