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Report for CCDS16790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16790.1 Public Mus musculus 2 Pak5 23 108 98 CCDS HistoryNCBI Gene:241656Re-query CCDS DB by CCDS ID:16790.1Re-query CCDS DB by GeneID:241656See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035264.8 ENSMUSP00000047285.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035264.8Link to Ensembl Protein Viewer:ENSMUSP00000047285.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000035264Re-query CCDS DB by Protein ID:ENSMUSP00000047285
Original member Current member EBI ENSMUST00000077200.3 ENSMUSP00000076440.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077200.3Link to Ensembl Protein Viewer:ENSMUSP00000076440.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077200Re-query CCDS DB by Protein ID:ENSMUSP00000076440
Original member NCBI NM_001360382.1 NP_001347311.1 Updated not alive Link to Nucleotide Sequence:NM_001360382.1Link to Protein Sequence:NP_001347311.1Re-query CCDS DB by Nucleotide ID:NM_001360382Re-query CCDS DB by Protein ID:NP_001347311
Current member NCBI NM_001360382.2 NP_001347311.1 Accepted alive Link to Nucleotide Sequence:NM_001360382.2Link to Protein Sequence:NP_001347311.1Re-query CCDS DB by Nucleotide ID:NM_001360382Re-query CCDS DB by Protein ID:NP_001347311Link to BLAST:NP_001347311.1
Original member NCBI NM_001360384.1 NP_001347313.1 Updated not alive Link to Nucleotide Sequence:NM_001360384.1Link to Protein Sequence:NP_001347313.1Re-query CCDS DB by Nucleotide ID:NM_001360384Re-query CCDS DB by Protein ID:NP_001347313
Current member NCBI NM_001360384.2 NP_001347313.1 Accepted alive Link to Nucleotide Sequence:NM_001360384.2Link to Protein Sequence:NP_001347313.1Re-query CCDS DB by Nucleotide ID:NM_001360384Re-query CCDS DB by Protein ID:NP_001347313Link to BLAST:NP_001347313.1
Original member NCBI NM_172858.2 NP_766446.2 Updated not alive Link to Nucleotide Sequence:NM_172858.2Link to Protein Sequence:NP_766446.2Re-query CCDS DB by Nucleotide ID:NM_172858Re-query CCDS DB by Protein ID:NP_766446
Current member NCBI NM_172858.3 NP_766446.2 Accepted alive Link to Nucleotide Sequence:NM_172858.3Link to Protein Sequence:NP_766446.2Re-query CCDS DB by Nucleotide ID:NM_172858Re-query CCDS DB by Protein ID:NP_766446Link to BLAST:NP_766446.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347311.1 719 Q8C015 719 100% 0 0
NP_001347313.1 719 Q8C015 719 100% 0 0
NP_766446.2 719 Q8C015 719 100% 0 0

Chromosomal Locations for CCDS 16790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 136083221 136083376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136085547 136085681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136087393 136087518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136097471 136097597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136098277 136098410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136100737 136101228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136116177 136116962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136174061 136174264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGTTTGGGAAGAAAAAGAAAAAGATCGAAATATCTGGCCCATCCAACTTTGAACACAGGGTTCATACTG
GA
TTTGATCCACAAGAGCAGAAGTTTACTGGCCTTCCCCAGCAGTGGCACAGCCTGTTAGCAGACACAGC
C
AACAGGCCCAAGCCCATGGTGGACCCATCATGCATCACACCCATACAGCTGGCTCCCATGAAGACAATC
GTC
AGAGGAAATAAATCCTGCAAGGAAACCTCTATCAATGGTCTGCTAGAGGATTTTGACAACATCTCCG
TG
ACTCGCTCCAACTCTCTAAGGAAAGAAAGCCCACCCACCCCAGATCAGGGAGCAGCTAGCCGCATTCA
A
GGCCACTCGGAAGAGAACGGCTTCATCACTTTCTCACAATATTCCAGTGAATCCGATACGACTGCGGAC
TAC
ACAACTGAAAAGTACAGAGACAGGAGTCTCTATGGAGATGACCTGGATCTGTACTATAAAAGCAGCC
AT
GCAGCCAAGCAAAATGGGCATGCCATGAAGATGAAACATGGAGACGCTTACTACCCTGAGATGAAGTC
T
TTGAAAACCGACCTGGCCGGATTCCCTGTCGACTATCACACCCACTTGGACTCTCTGAGAAAATCAAGT
GAA
TATGGTGACCTTAGGTGGGATTATCAGAGAGCCTCTAGTAGCTCCCCTCTGGACTACTCATTCCAGC
TC
ACGCCTTCTAGAACTGCAGGGACCAGCAGGTGCTCCAAGGAGAGTCTGGCATACAGTGAAAGTGATTG
G
GGACCCAGCCTGGATGACTATGACAGGAGGCCAAAATCATCATACCTGCATCAGACGAGCCCTCAGCCA
GCC
ATGCGCCAGAGATCCAAGTCCGGCTCAGGGCTTCAGGAACCCATGATGCCATTTGGAGCAAGTGCAT
TT
AAAACTCATCCTCAAGGACACTCGTACAACTCCTACACCTACCCTCGATTGTCCGAGCCCACAATGTG
C
ATTCCAAAGGTGGATTACGATCGAGCACAGATGGTCTTCAGTCCTCCACTGTCAGGGTCCGACACTTAC
CCC
AGAGGCCCCACCAAACTACCTCAAAGTCAAAGCAAAGCAGGCTACTCTTCAGGCAGCCACCAGTACC
CT
TCTGGGTACCACAAAGCATCTCTATACCACCATCCATCCCTGCAAACCAGTTCTCAGTACATCTCCAC
C
GCTTCTTACTTAAGCTCTCTCAGTATCTCCTCGAGCACCTACCCTCCACCTAGCTGGGGCTCCTCCTCA
GAC
CAGCAGCCCTCAAGGGTATCCCATGAACAATTCCGAGCTGCCCTGCAACTGGTGGTCAGCCCAGGAG
AC
CCCAGGGAATATTTGGATAACTTTATTAAAATCGGAGAAGGGTCGACAGGCATCGTGTGCATTGCAAC
A
GAGAAACACACAGGCAAGCAAGTGGCAGTGAAGAAAATGGACCTCCGAAAGCAGCAGAGACGGGAACTC
CTT
TTTAATGAGGTCGTGATAATGCGTGATTACCACCATGACAACGTAGTTGACATGTACAACAGCTACC
TT
GTTGGAGATGAGCTCTGGGTGGTCATGGAGTTTCTAGAAGGTGGTGCCTTGACAGACATTGTCACTCA
T
ACCAGAATGAATGAAGAGCAGATAGCTACTGTCTGCCTGTCAGTTCTGAAAGCTCTGTCCTACCTTCAT
AAC
CAAGGAGTGATTCACAGGGACATAAAGAGTGACTCCATTCTTCTGACAAGCGATGGCCGGATAAAGT
TA
TCTGACTTTGGTTTCTGTGCTCAAGTTTCCAAAGAGGTGCCAAAGAGGAAGTCACTGGTGGGTACCCC
A
TACTGGATGGCACCTGAGGTGATTTCCAGGCTACCTTATGGGACAGAGGTGGACATCTGGTCCCTCGGG
ATA
ATGGTGATAGAGATGATTGATGGGGAGCCCCCCTATTTCAATGAGCCTCCTCTGCAGGCCATGAGGA
GG
ATCCGGGACAGTTTACCTCCAAGAGTGAAGGACCTACACAAGGTTTCTTCCATGCTCCGAGGATTCCT
A
GATCTTATGTTGGTGAGGGAGCCCTCTCAAAGAGCCACAGCTCAAGAACTCCTTGGACATCCATTCTTA
AAA
TTGGCAGGTCCACCATCTTGCATTGTTCCTCTCATGAGACAATACAGACATCACTGA


Translation (719 aa):
MFGKKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPKPMVDPSCITPIQLAPMKTI
V
RGNKSCKETSINGLLEDFDNISVTRSNSLRKESPPTPDQGAASRIQGHSEENGFITFSQYSSESDTTAD
Y
TTEKYRDRSLYGDDLDLYYKSSHAAKQNGHAMKMKHGDAYYPEMKSLKTDLAGFPVDYHTHLDSLRKSS
E
YGDLRWDYQRASSSSPLDYSFQLTPSRTAGTSRCSKESLAYSESDWGPSLDDYDRRPKSSYLHQTSPQP
A
MRQRSKSGSGLQEPMMPFGASAFKTHPQGHSYNSYTYPRLSEPTMCIPK
VDYDRAQMVFSPPLSGSDTY
P
RGPTKLPQSQSKAGYSSGSHQYPSGYHKASLYHHPSLQTSSQYISTASYLSSLSISSSTYPPPSWGSSS
D
QQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRREL
L
FNE
VVIMRDYHHDNVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKALSYLH
N
QGVIHRDIKSDSILLTSDGR
IKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLG
I
MVIEMIDGEPPYFNEPPLQAMRRIRDSLPPRVKDLHK
VSSMLRGFLDLMLVREPSQRATAQELLGHPFL
K
LAGPPSCIVPLMRQYRHH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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