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Report for CCDS15425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15425.1 Public Mus musculus 1 Fmo2 23 108 98 CCDS HistoryNCBI Gene:55990Re-query CCDS DB by CCDS ID:15425.1Re-query CCDS DB by GeneID:55990See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045902.12 ENSMUSP00000044405.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045902.12Link to Ensembl Protein Viewer:ENSMUSP00000044405.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045902Re-query CCDS DB by Protein ID:ENSMUSP00000044405
Original member Current member EBI ENSMUST00000111510.7 ENSMUSP00000107135.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111510.7Link to Ensembl Protein Viewer:ENSMUSP00000107135.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111510Re-query CCDS DB by Protein ID:ENSMUSP00000107135
Original member Current member NCBI NM_001360913.1 NP_001347842.1 Accepted alive Link to Nucleotide Sequence:NM_001360913.1Link to Protein Sequence:NP_001347842.1Re-query CCDS DB by Nucleotide ID:NM_001360913Re-query CCDS DB by Protein ID:NP_001347842Link to BLAST:NP_001347842.1
Original member Current member NCBI NM_001360914.1 NP_001347843.1 Accepted alive Link to Nucleotide Sequence:NM_001360914.1Link to Protein Sequence:NP_001347843.1Re-query CCDS DB by Nucleotide ID:NM_001360914Re-query CCDS DB by Protein ID:NP_001347843Link to BLAST:NP_001347843.1
Original member Current member NCBI NM_018881.4 NP_061369.2 Accepted alive Link to Nucleotide Sequence:NM_018881.4Link to Protein Sequence:NP_061369.2Re-query CCDS DB by Nucleotide ID:NM_018881Re-query CCDS DB by Protein ID:NP_061369Link to BLAST:NP_061369.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347842.1 535 Q8K2I3 535 100% 0 0
NP_001347843.1 535 Q8K2I3 535 100% 0 0
NP_061369.2 535 Q8K2I3 535 100% 0 0

Chromosomal Locations for CCDS 15425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162876728 162877079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162878013 162878085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162880382 162880737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162881990 162882189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162886309 162886451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162887568 162887730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162888696 162888884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162898174 162898305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCAAAGAAGGTTGTGGTGATTGGAGCAGGGGTCAGTGGCCTAATCTCTCTGAAGTGCTGCGTGGACG
AGGGTCTGGAGCCCACCTGCTTCGAAAGGACTGAAGATATAGGGGGACTGTGGAGATTCAAAGAAAACGT
GGAAGATGGCCGCGCTAGCATCTACCGCTCTGTCATTACCAACACTAGCAAAGAAATGTCCTGTTTCAGT
GACTTCCCGATGCCGGAGGACTTCCCCAACTTCCTGCACAACTCTAAACTCCTGGAATATTTTAGGATCT
TTGCCAAGAAATTTGATCTCCTAAAATATATTCAGTTTCAGACCACTGTCATTAGTGTGAAAAAACGCCC
GGACTTCGCATCTTCTGGGCAATGGGAAGTTTATACTCAGAGCAACGGAAAGGAGCAACGCACTGTCTTT
GACGCTGTTATGGTTTGCAGCGGCCATCACATCCAGCCTCACCTGCCACTCAAGTCATTCCCAGGTATTG
AGAGGTTCCGAGGCCAGTATTTCCATAGCCGCGAATACAAGCACCCAGTGGGGTTTGAGGGGAAACGCAT
CCTGGTGGTTGGAATAGGAAACTCAGCTGCAGATATTGCCTCTGAACTGAGTAAGACGGCCGCGCAGGTG
TTTGTCAGCACCAGACATGGATCCTGGGTCATGAGTCGAATCTCTGAAGATGGCTACCCTTGGGACATGG
TGTTCCACACTAGATTTAGCTCCATGCTCCGAAATGTCCTGCCCCGCACGGTCGTCAAGTGGATGATGGA
ACAACAGATGAATCGATGGTTCAACCATGAAAATTATGGTCTGGTGCCTCAGAACAAATACCTTATGAAA
GAACCTGTGCTAAACGACGACCTCCCCAGCCGCCTGCTGTACGGAGCCATCAAAGTAAAAACACGGGTGA
AGGAGCTCACGGAGACAGCTGTGGTCTTCGAGGATGGCACGGTGGAGGAAGACGTGGATATCATTGTCTT
TGCCACGGGGTATACGTTCTCTTTTTCTTTCCTGGAAGACTCACTTGTTAAAGTGGAGGATAATAGGGTT
TCCCTGTACAAAGCCATGTTTCCCCCTCACCTGGAGAAGCCAACCCTTGCGTGCATAGGTCTCATCCAGC
CTCTAGGCTCCATCTTCCCAACCGTAGAGCTTCAGGCGCGCTGGGCGACAAGAGTTTTCAAAGGCTTGTG
TAGCTTGCCTTCGGAGACGACTATGATGGCAGACATTGTTGAAAGAAATGAAAAAAGAGTTAACCTGTTT
GGGAAAAGCCAGAGTCAGATACTGCAGACCAACTACGTTGACTACCTGGATGAACTCGCCTTGGAGATAG
GTGCAAAGCCAGATTTCGTCTCTCTCTTTTTCAAAGACCCTAAACTGGCTGTGAAACTCTACTTCGGACC
CTGTAATTCCTACCAGTACCGCCTGGTTGGACCTGGGCAGTGGGAAGGAGCCAGGAACGCCATCCTCACC
CAGAAGCAGAGGATCCTGAAACCCTTAAAGACCCGGACTCTCCAGTCCTCTGATAGTGCCCCAGTGTCTT
TCCTGCTCAAGATCCTGGGGCTGCTCGCTGTTGTTCTGGCCTTCTTTTTCCAACTTCAGGGGTTTTAA

Translation (535 aa):
MAKKVVVIGAGVSGLISLKCCVDEGLEPTCFERTEDIGGLWRFKENVEDGRASIYRSVITNTSKEMSCFS
DFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVISVKKRPDFASSGQWEVYTQSNGKEQRTVF
DAVMVCSGHHIQPHLPLKSFPGIERFRGQYFHSREYKHPVGFEGKRILVVGIGNSAADIASELSKTAAQV
FVSTRHGSWVMSRISEDGYPWDMVFHTRFSSMLRNVLPRTVVKWMMEQQMNRWFNHENYGLVPQNKYLMK
EPVLNDDLPSRLLYGAIKVKTRVKELTETAVVFEDGTVEEDVDIIVFATGYTFSFSFLEDSLVKVEDNRV
SLYKAMFPPHLEKPTLACIGLIQPLGSIFPTVELQARWATRVFKGLCSLPSETTMMADIVERNEKRVNLF
GKSQSQILQTNYVDYLDELALEIGAKPDFVSLFFKDPKLAVKLYFGPCNSYQYRLVGPGQWEGARNAILT
QKQRILKPLKTRTLQSSDSAPVSFLLKILGLLAVVLAFFFQLQGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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