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Report for CCDS38283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38283.1 Public Mus musculus 2 Ttll9 23 108 98 CCDS HistoryNCBI Gene:74711Re-query CCDS DB by CCDS ID:38283.1Re-query CCDS DB by GeneID:74711See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099197.8 ENSMUSP00000096803.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099197.8Link to Ensembl Protein Viewer:ENSMUSP00000096803.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099197Re-query CCDS DB by Protein ID:ENSMUSP00000096803
Original member Current member NCBI NM_001083618.1 NP_001077087.1 Accepted alive Link to Nucleotide Sequence:NM_001083618.1Link to Protein Sequence:NP_001077087.1Re-query CCDS DB by Nucleotide ID:NM_001083618Re-query CCDS DB by Protein ID:NP_001077087Link to BLAST:NP_001077087.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077087.1 461 A2APC3-1 461 100% 0 0

Chromosomal Locations for CCDS 38283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152962541 152962555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152972288 152972331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152976151 152976243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152983055 152983166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152984136 152984321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152989594 152989662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152990024 152990098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152991578 152991668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152993169 152993209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152994064 152994151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152999299 152999357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153000101 153000297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153002244 153002357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153002898 153003022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153006909 153006985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGTCGCGACAGAAGAATCAAAATTCCAAGGGCCATGGAGTGTCGAAAGGAAAAGAGAGAGAGCAGAGAA
CCTTAATCCGCTTCAAGACCACCCTCATGAACACACTCATGGATGTTCTGCGCCACAGGCCCGGATGGGT
GGAAGTCAAAGATGAAGGCGAATGGGATTTCTATTGGTGTGATGTCAGCTGGCTGCGGGAGAACTTTGAC
CACACCTACATGGATGAGCACGTGCGCATAAGCCACTTCCGGAACCACTACGAGCTTACCAGGAAAAACT
ACATGGTAAAGAACCTGAAGCGCTTCCGGAAGTACCTGGAGCGTGAGTCAGGAAAGACGGAGGCAGCCAA
GTGTGACTTCTTCCCCAAAACCTTTGAGATGCCCTGTGAGTACCATCTGTTTGTGGAGGAGTTTCGCAAG
AACCCCGGGATCACCTGGATCATGAAGCCTGTCGCCCGATCTCAGGGGAAGGGCATATTTCTCTTCCGGA
GACTGAAAGACATCATGGACTGGAGGAAGGGCACTTCGGGGAAGAAACCCACCGGTGTGGAGACGCAGCC
TGCTCGAGCCAACATGAACCCCTCAGGCAGCCATGACACAAGGAGTTCTGATGACCAGAAAGATGACCTC
CCGGTGGAGAACTACGTGGCTCAGCGTTACGTGGAAAACCCCTACTTAATAGGAGGCCGCAAGTTTGACC
TGCGCGTCTACGTGCTGGTGATGTCGTACATCCCTCTGCGGGCATGGCTGTACCGTGATGGCTTTGCCAG
GTTCTCCAACACCCGATTCACACTGAATAGCATCGATGACCACTATGTTCACCTCACCAATGTTGCTGTG
CAGAAGACATCGCCTGACTACCACCTAAAAAAGGGTTGCAAGTGGATGCTTCAGCGCTTCAGGCAGTACC
TGGCTTCCAAGCATGGTCCTAAGGCCGTGGAGACACTCTTCAGTGACATGGACAATATCTTCATCAAGAG
CCTGCAGAGCGTGCAGAAGGTGATCATCAGTGATAAGCACTGCTTTGAGCTCTATGGCTATGACATCCTC
ATTGACCAGGACCTCAAGCCGTGGCTCCTAGAAGTCAATGCCTCTCCTTCCCTGACGGCCAGCAGCCAGG
AGGACTATGAACTCAAGACCTGTCTGCTGGAGGATACCCTGCACGTGGTGGACATGGAGGCCAGGCTCAC
AGGAAAGGAGAAGAGAGTCGGGGGCTTCGATCTCATGTGGAATGATGGCCCTGTCAGCCGAGAGGATGGG
CCTTCTGACCTATCAGGGATGGGGAACTTTGTGACCAACACTCACCTAGGCTGCGTCAATGACCGGAAGG
AGCAGCTCAGGCAGCTGTTCCGATCCCTTCAAGCGCAGAGGAAAGCCCCTAGCTGA

Translation (461 aa):
MSRQKNQNSKGHGVSKGKEREQRTLIRFKTTLMNTLMDVLRHRPGWVEVKDEGEWDFYWCDVSWLRENFD
HTYMDEHVRISHFRNHYELTRKNYMVKNLKRFRKYLERESGKTEAAKCDFFPKTFEMPCEYHLFVEEFRK
NPGITWIMKPVARSQGKGIFLFRRLKDIMDWRKGTSGKKPTGVETQPARANMNPSGSHDTRSSDDQKDDL
PVENYVAQRYVENPYLIGGRKFDLRVYVLVMSYIPLRAWLYRDGFARFSNTRFTLNSIDDHYVHLTNVAV
QKTSPDYHLKKGCKWMLQRFRQYLASKHGPKAVETLFSDMDNIFIKSLQSVQKVIISDKHCFELYGYDIL
IDQDLKPWLLEVNASPSLTASSQEDYELKTCLLEDTLHVVDMEARLTGKEKRVGGFDLMWNDGPVSREDG
PSDLSGMGNFVTNTHLGCVNDRKEQLRQLFRSLQAQRKAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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