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Report for CCDS42848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42848.1 Public Homo sapiens 20 SDCBP2 24 110 108 CCDS HistoryNCBI Gene:27111Re-query CCDS DB by CCDS ID:42848.1Re-query CCDS DB by GeneID:27111See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42848.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339987.7 ENSP00000342935.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339987.7Link to Ensembl Protein Viewer:ENSP00000342935.3Re-query CCDS DB by Nucleotide ID:ENST00000339987Re-query CCDS DB by Protein ID:ENSP00000342935
Original member Current member EBI ENST00000360779.4 ENSP00000354013.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360779.4Link to Ensembl Protein Viewer:ENSP00000354013.3Re-query CCDS DB by Nucleotide ID:ENST00000360779Re-query CCDS DB by Protein ID:ENSP00000354013
Original member Current member EBI ENST00000381812.5 ENSP00000371233.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381812.5Link to Ensembl Protein Viewer:ENSP00000371233.1Re-query CCDS DB by Nucleotide ID:ENST00000381812Re-query CCDS DB by Protein ID:ENSP00000371233
Original member Current member NCBI NM_001199784.2 NP_001186713.1 Accepted alive Link to Nucleotide Sequence:NM_001199784.2Link to Protein Sequence:NP_001186713.1Re-query CCDS DB by Nucleotide ID:NM_001199784Re-query CCDS DB by Protein ID:NP_001186713Link to BLAST:NP_001186713.1
Original member Current member NCBI NM_080489.5 NP_536737.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080489.5Link to Protein Sequence:NP_536737.3Re-query CCDS DB by Nucleotide ID:NM_080489Re-query CCDS DB by Protein ID:NP_536737Link to BLAST:NP_536737.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186713.1 292 Q9H190-1 292 100% 0 0
NP_536737.3 292 Q9H190-1 292 100% 0 0

Chromosomal Locations for CCDS 42848.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1310441 1310495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1310800 1310891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1312337 1312508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1312587 1312762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1313340 1313498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1318318 1318418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1319590 1319659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1320363 1320416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGTCATCCCTGTACCCATCTCTAGAGGACCTAAAAGTGGACCAAGCCATTCAGGCCCAGGTCAGAGCCT
CACCCAAGATGCCAGCCCTGCCAGTCCAGGCAACAGCCATTTCCCCACCACCAGTTTTGTACCCAAACTT
GGCAGAACTGGAAAATTATATGGGTCTTTCCCTCTCCAGCCAAGAAGTCCAGGAGAGCCTGCTTCAGATT
CCAGAGGGTGACAGTACAGCGGTCTCGGGCCCCGGGCCCGGCCAGATGGTGGCACCGGTAACCGGGTACA
GCCTGGGCGTGCGGCGAGCTGAGATCAAGCCCGGGGTGCGCGAGATCCACCTGTGCAAGGACGAGCGCGG
CAAGACCGGGCTGAGGCTGCGGAAGGTCGACCAGGGGCTCTTTGTGCAGTTGGTCCAGGCCAACACCCCT
GCATCCCTTGTGGGGCTGCGCTTTGGGGACCAGCTCCTGCAGATTGACGGGCGTGACTGTGCTGGGTGGA
GCTCGCACAAAGCCCATCAGGTGGTGAAGAAGGCATCAGGCGATAAGATTGTCGTGGTGGTTCGGGACAG
GCCGTTCCAGCGGACTGTCACCATGCACAAGGACAGCATGGGCCACGTCGGCTTCGTGATCAAGAAGGGG
AAGATTGTCTCTCTGGTCAAAGGGAGTTCTGCGGCCCGCAACGGGCTCCTCACCAACCACTACGTGTGTG
AGGTGGACGGGCAGAATGTTATCGGGCTGAAGGACAAAAAGATCATGGAGATTCTGGCCACGGCTGGGAA
CGTTGTCACCCTGACCATCATCCCCAGTGTGATCTACGAGCACATGGTCAAAAAGTTGCCTCCAGTCCTG
CTCCACCACACCATGGACCACTCCATCCCAGATGCCTGA

Translation (292 aa):
MSSLYPSLEDLKVDQAIQAQVRASPKMPALPVQATAISPPPVLYPNLAELENYMGLSLSSQEVQESLLQI
PEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTP
ASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKG
KIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVL
LHHTMDHSIPDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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