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Report for CCDS51719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51719.1 Public Mus musculus 6 Dlx6 23 108 98 CCDS HistoryNCBI Gene:13396Re-query CCDS DB by CCDS ID:51719.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51719.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160937.8 ENSMUSP00000124204.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160937.8Link to Ensembl Protein Viewer:ENSMUSP00000124204.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000160937Re-query CCDS DB by Protein ID:ENSMUSP00000124204
Original member Current member EBI ENSMUST00000171311.7 ENSMUSP00000128585.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171311.7Link to Ensembl Protein Viewer:ENSMUSP00000128585.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171311Re-query CCDS DB by Protein ID:ENSMUSP00000128585
Original member NCBI NM_010057.2 NP_034187.1 Updated not alive Link to Nucleotide Sequence:NM_010057.2Link to Protein Sequence:NP_034187.1Re-query CCDS DB by Nucleotide ID:NM_010057Re-query CCDS DB by Protein ID:NP_034187
Current member NCBI NM_010057.3 NP_034187.1 Accepted alive Link to Nucleotide Sequence:NM_010057.3Link to Protein Sequence:NP_034187.1Re-query CCDS DB by Nucleotide ID:NM_010057Re-query CCDS DB by Protein ID:NP_034187Link to BLAST:NP_034187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034187.1 297 P70397-2 297 100% 0 0

Chromosomal Locations for CCDS 51719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 6863380 6863827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6865078 6865271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6867041 6867292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGATGACCATGACTACGATGGCTGACGGCTTGGAAGGCCAGGACTCGTCCAAATCCGCCTTCATGGAGT
TC
GGGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCA
G
CCGCCGCCGCCGCCACCGCCGCCGCCGCCGCAGCCGCACTCGCAGCAGACCTCCCCGGCCATGGCAGGC
GCA
CATTACCCTCTGCACTGCTTGCACTCGGCCGCGGCGGCGGCGGCGGCGGCCGGCTCCCACCATCACC
AC
CACCAGCACCACCACCACGGCTCGCCCTACGCGTCGAGCGGAGGCAACTCCTACAACCACCGATCGCT
C
GCCGCCTACCCCTACATGAGCCACTCGCAGCACAGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCG
GCC
GCCCAGACGCGCGGGGACGACACAGATCAACAAAAAACGACAGTGATCGAAAACGGGGAAATCAGGT
TC
AACGGAAAGGGGAAAAAGATTCGGAAGCCTCGGACCATTTATTCCAGCCTGCAGCTCCAGGCTTTAAA
C
CATCGCTTTCAGCAGACTCAATACCTGGCCCTTCCCGAGAGAGCCGAACTGGCTGCTTCCTTAGGACTG
ACA
CAAACACAGGTGAAGATATGGTTTCAGAATAAGCGCTCTAAGTTTAAGAAATTGCTGAAGCAGGGTA
GT
AACCCACACGAGAGTGACCCCCTCCCGGGTTCAGCAGCCCTGTCACCACGATCACCAGCCCTGCCTCC
A
GTGTGGGACGTTTCTGCCTCTGCCAAGGGCGTCAGTATGCCTCCCAACAGCTACATGCCGGGGTATTCA
CAC
TGGTATTCCTCACCACACCAGGACACCATGCAGAGACCACAGATGATGTGA


Translation (297 aa):
MMTMTTMADGLEGQDSSKSAFMEFGQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPQPHSQQTSPAMAG
A
HYPLHCLHSAAAAAAAAGSHHHHHQHHHHGSPYASSGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSA
A
AQTRGDDT
DQQKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGL
T
QTQ
VKIWFQNKRSKFKKLLKQGSNPHESDPLPGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMPGYS
H
WYSSPHQDTMQRPQMM




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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