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Report for CCDS10712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10712.1 Public Homo sapiens 16 COX6A2 24 110 108 CCDS HistoryNCBI Gene:1339Re-query CCDS DB by CCDS ID:10712.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10712.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287490.5 ENSP00000287490.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287490.5Link to Ensembl Protein Viewer:ENSP00000287490.4Re-query CCDS DB by Nucleotide ID:ENST00000287490Re-query CCDS DB by Protein ID:ENSP00000287490
Original member Current member NCBI NM_005205.4 NP_005196.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005205.4Link to Protein Sequence:NP_005196.1Re-query CCDS DB by Nucleotide ID:NM_005205Re-query CCDS DB by Protein ID:NP_005196Link to BLAST:NP_005196.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005196.1 97 Q02221 97 100% 0 0

Chromosomal Locations for CCDS 10712.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31427774 31427857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31428015 31428151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31428253 31428325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGGCTTTGCCTCTGAGGCCCCTGACCCGGGGCTTGGCCAGCGCTGCCAAAGGAGGCCACGGAGGAGCAG
GAGCTCGTACCTGGCGTCTGCTGACCTTCGTGCTGGCGCTGCCCAGCGTGGCCCTCTGCACCTTCAACTC
CTATCTCCACTCGGGCCACCGCCCGCGCCCCGAGTTCCGTCCCTACCAACACCTCCGCATCCGCACCAAG
CCCTACCCCTGGGGGGACGGCAACCACACTCTGTTCCACAATAGCCACGTGAACCCTCTGCCCACGGGCT
ACGAACACCCCTGA

Translation (97 aa):
MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFRPYQHLRIRTK
PYPWGDGNHTLFHNSHVNPLPTGYEHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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