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Report for CCDS38011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38011.1 Public Mus musculus 19 Borcs7 23 108 98 CCDS HistoryNCBI Gene:66439Re-query CCDS DB by CCDS ID:38011.1Re-query CCDS DB by GeneID:66439See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074912.7 ENSMUSP00000074447.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074912.7Link to Ensembl Protein Viewer:ENSMUSP00000074447.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074912Re-query CCDS DB by Protein ID:ENSMUSP00000074447
Original member Current member NCBI NM_025563.3 NP_079839.1 Accepted alive Link to Nucleotide Sequence:NM_025563.3Link to Protein Sequence:NP_079839.1Re-query CCDS DB by Nucleotide ID:NM_025563Re-query CCDS DB by Protein ID:NP_079839Link to BLAST:NP_079839.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079839.1 105 Q9CRC6 105 100% 0 0

Chromosomal Locations for CCDS 38011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46689948 46690085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46699556 46699618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46699738 46699781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46700775 46700795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46701515 46701566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGCGACTGGGACGCCGGATTCGCAAGCCCGATTTGGTCAGTCCGTGAAGGGGCTTCTCACGGAGAAGG
TGAACACCTGTGGCACCGATGTAATCGCGCTCACCAAGCAGGTGCTGAAAGGCTCGCGGAGCTCCGAGCT
GCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGATAGTTTAAGG
AAGATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAATGTGGAACAGTCGC
CTGACCTGCAGGACCAGTTGAGTCACTTACTGAAGTAG

Translation (105 aa):
MATGTPDSQARFGQSVKGLLTEKVNTCGTDVIALTKQVLKGSRSSELLGQAARNMVLQEDAILHSEDSLR
KMAIITTHLQYQQEAIQKNVEQSPDLQDQLSHLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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