NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25801.1 Public Mus musculus 12 Slc7a15 23 108 98 CCDS HistoryNCBI Gene:328059Re-query CCDS DB by CCDS ID:25801.1Re-query CCDS DB by GeneID:328059See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036938.8 ENSMUSP00000047873.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036938.8Link to Ensembl Protein Viewer:ENSMUSP00000047873.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000036938Re-query CCDS DB by Protein ID:ENSMUSP00000047873
Original member Current member EBI ENSMUST00000165657.2 ENSMUSP00000129806.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165657.2Link to Ensembl Protein Viewer:ENSMUSP00000129806.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165657Re-query CCDS DB by Protein ID:ENSMUSP00000129806
Original member Current member NCBI NM_177802.3 NP_808470.1 Accepted alive Link to Nucleotide Sequence:NM_177802.3Link to Protein Sequence:NP_808470.1Re-query CCDS DB by Nucleotide ID:NM_177802Re-query CCDS DB by Protein ID:NP_808470Link to BLAST:NP_808470.1

Chromosomal Locations for CCDS 25801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8529345 8529575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8530195 8530282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8534381 8534505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8535377 8535506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8535681 8535793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGACTGCCGTCCCCCTGGTCACCATCCTGTATGTCCTGGTCAATATCAGTTACCTGCTGGTTATGTCAC
CCTCAGAGATCCTCTCCTCTGATGCCATAGCTGTGATCTGGGGGGACCGAGTTCTGGGGTCCTGGGCCTG
GCTGGTGCCCTTGGCTGTTGCTCTTTCAACATTTGGCACTGTCAATGGGGGGTTCTTCAGCGGCAGCCGC
GTGTGCTATGCAGCTGCGAGAGAAGGTCACATGCCGCAGCTTATGTCCATGATTCACGTGAATCGACTGA
CACCAGCCCCAGCCCAGATCTTCACCACGGCTGTGGCTTTACTGCTGGTCATCCCGGGAAACTTCAGCAC
CTTTGTGAACCTCTTAAGCTTCCTGTCCTGGCTCACCTATGGAACTACCTTTGCCTGTCTTCTGTATTTG
CGAATAAAGACAAAGAATCTCCCCCACACTTACAAGGTTCCCACCTTCATCCCTGCCATCATGCTCCTGG
TGTCTCTCTACCTGGTGTTGGCACCCATCATTGACCACCCGCAGATAGAATTCCTATACATCTTCCTGTT
CGTGCTCAGTGGCTTCCCGGTGTACTTCCTGCTTTTCCACTTCCAGTGTCAGTTCAAGTGTATACAAACG
GCCACTATGCATCTCCAGCTGCTCCTGGAAGTTGCTCCAACCACTAAAGATCATTGA

Translation (228 aa):
MTAVPLVTILYVLVNISYLLVMSPSEILSSDAIAVIWGDRVLGSWAWLVPLAVALSTFGTVNGGFFSGSR
VCYAAAREGHMPQLMSMIHVNRLTPAPAQIFTTAVALLLVIPGNFSTFVNLLSFLSWLTYGTTFACLLYL
RIKTKNLPHTYKVPTFIPAIMLLVSLYLVLAPIIDHPQIEFLYIFLFVLSGFPVYFLLFHFQCQFKCIQT
ATMHLQLLLEVAPTTKDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH