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Report for CCDS17318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17318.1 Public Mus musculus 3 Cetn4 23 108 98 CCDS HistoryNCBI Gene:207175Re-query CCDS DB by CCDS ID:17318.1Re-query CCDS DB by GeneID:207175See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102955.10 ENSMUSP00000100020.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102955.10Link to Ensembl Protein Viewer:ENSMUSP00000100020.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102955Re-query CCDS DB by Protein ID:ENSMUSP00000100020
Original member Current member NCBI NM_145825.2 NP_665824.1 Accepted alive Link to Nucleotide Sequence:NM_145825.2Link to Protein Sequence:NP_665824.1Re-query CCDS DB by Nucleotide ID:NM_145825Re-query CCDS DB by Protein ID:NP_665824Link to BLAST:NP_665824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665824.1 168 Q8K4K1-1 168 100% 0 0

Chromosomal Locations for CCDS 17318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 37309092 37309181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37309345 37309482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37309937 37310065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37310293 37310439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37312357 37312359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGCATCCAGCCAGCGCATAACTTTAGACCAATGGAAGAAAAAAGCAGCAAAAGTTGAACTGAATGACA
CCCAGAAGCAAGAAATTAAAGAGGCCTTTGACTTATTCGATATTGATGGATCTGGAACCATAGATCTGAA
AGAACTGAAGATTGCAATGAGGGCCTTAGGCTTTGAGCCAAAGAAAGAAGAAGTAAAACAACTGATCGCT
GAAATCGACAAGGAAGGGACTGGCACCATTTGTTTTGAAGATTTTTTTGCCATCATGAGCGTAAAAATGA
GTGAAAAAGATGAAAAAGAAGAAATACTGAAGGCATTTAAATTATTTGATGACGATGCTACGGGAAGCAT
ATCACTAAATAACATCAAGAGGGTTGCCAAGGAGCTAGGGGAAAACTTAACCGAAGATGAATTACAGGAA
ATGCTTGATGAAGCTGATCGTGACGGGGATGGAGAGATTAATGAGGAAGAATTCTTGAAGATGATGAAGA
AGACCAGCCTTTATTAG

Translation (168 aa):
MASSQRITLDQWKKKAAKVELNDTQKQEIKEAFDLFDIDGSGTIDLKELKIAMRALGFEPKKEEVKQLIA
EIDKEGTGTICFEDFFAIMSVKMSEKDEKEEILKAFKLFDDDATGSISLNNIKRVAKELGENLTEDELQE
MLDEADRDGDGEINEEEFLKMMKKTSLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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