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Report for CCDS47338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47338.1 Public Homo sapiens 5 C5orf58 24 110 108 CCDS HistoryNCBI Gene:133874Re-query CCDS DB by CCDS ID:47338.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 47338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000593851.5 ENSP00000490013.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000593851.5Link to Ensembl Protein Viewer:ENSP00000490013.2Re-query CCDS DB by Nucleotide ID:ENST00000593851Re-query CCDS DB by Protein ID:ENSP00000490013
Original member Current member NCBI NM_001102609.3 NP_001096079.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102609.3Link to Protein Sequence:NP_001096079.2Re-query CCDS DB by Nucleotide ID:NM_001102609Re-query CCDS DB by Protein ID:NP_001096079Link to BLAST:NP_001096079.2
Original member Current member NCBI NM_001305393.2 NP_001292322.2 Accepted alive Link to Nucleotide Sequence:NM_001305393.2Link to Protein Sequence:NP_001292322.2Re-query CCDS DB by Nucleotide ID:NM_001305393Re-query CCDS DB by Protein ID:NP_001292322Link to BLAST:NP_001292322.2
Original member Current member NCBI NM_001305394.2 NP_001292323.2 Accepted alive Link to Nucleotide Sequence:NM_001305394.2Link to Protein Sequence:NP_001292323.2Re-query CCDS DB by Nucleotide ID:NM_001305394Re-query CCDS DB by Protein ID:NP_001292323Link to BLAST:NP_001292323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096079.2 81 C9J3I9 81 100% 0 0
NP_001292322.2 81 C9J3I9 81 100% 0 0
NP_001292323.2 81 C9J3I9 81 100% 0 0

Chromosomal Locations for CCDS 47338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 170234977 170235070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 170245962 170246113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGGGTAAGAAGCGTGTTACTGATCATAAGCTAAATGTGGACAAAGTAATTAAAAATATTAACACAATTT
CTTCGGAGTTGAAGAAGATAAAAGAGCTCTCCCAGTTATTGCTTTGTGACCTTATCCTACATTTTAATCA
TCCCATCAAGACTGAGAACTTAGCAGAAGCAGAAAGAAACAACCCCCTCTTTGAAGAGTCTAAAATATCA
GATGTATCCCTTGTTTCTAACAGTTTTTCTATCTGA

Translation (81 aa):
MGKKRVTDHKLNVDKVIKNINTISSELKKIKELSQLLLCDLILHFNHPIKTENLAEAERNNPLFEESKIS
DVSLVSNSFSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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